View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14063_low_11 (Length: 359)

Name: NF14063_low_11
Description: NF14063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14063_low_11
NF14063_low_11
[»] chr5 (25 HSPs)
chr5 (9-340)||(15149454-15149782)
chr5 (63-248)||(17159257-17159444)
chr5 (55-306)||(17162680-17162932)
chr5 (51-116)||(23757181-23757248)
chr5 (51-116)||(23822637-23822704)
chr5 (51-164)||(26668239-26668357)
chr5 (51-164)||(26939836-26939954)
chr5 (51-164)||(29166990-29167108)
chr5 (60-164)||(36430479-36430588)
chr5 (53-164)||(6154451-6154567)
chr5 (51-247)||(35678915-35679112)
chr5 (30-132)||(10759357-10759464)
chr5 (173-277)||(4872739-4872843)
chr5 (55-164)||(7452716-7452830)
chr5 (51-258)||(9725790-9725991)
chr5 (51-164)||(37247816-37247934)
chr5 (51-116)||(37646072-37646139)
chr5 (51-116)||(37536954-37537020)
chr5 (51-147)||(4872860-4872961)
chr5 (55-116)||(36424650-36424713)
chr5 (51-116)||(39519397-39519464)
chr5 (51-116)||(39524036-39524103)
chr5 (77-164)||(40148804-40148894)
chr5 (51-147)||(20180172-20180271)
chr5 (173-201)||(22832659-22832687)
[»] chr4 (25 HSPs)
chr4 (51-258)||(19102837-19103045)
chr4 (53-164)||(32220583-32220699)
chr4 (51-164)||(8694674-8694792)
chr4 (51-164)||(16422007-16422125)
chr4 (175-303)||(16948827-16948954)
chr4 (51-147)||(12822927-12823028)
chr4 (173-248)||(12875285-12875360)
chr4 (51-147)||(31274492-31274593)
chr4 (53-147)||(31728385-31728483)
chr4 (51-147)||(37258880-37258981)
chr4 (51-147)||(37263580-37263681)
chr4 (51-164)||(5925821-5925930)
chr4 (51-164)||(55252605-55252724)
chr4 (53-247)||(2820676-2820869)
chr4 (16-116)||(8029316-8029419)
chr4 (97-164)||(27183196-27183264)
chr4 (173-245)||(29349346-29349418)
chr4 (51-147)||(40408925-40409023)
chr4 (51-147)||(51698907-51699008)
chr4 (51-116)||(5270440-5270506)
chr4 (53-132)||(33462376-33462457)
chr4 (173-258)||(48275976-48276061)
chr4 (173-245)||(19907133-19907204)
chr4 (53-116)||(19907301-19907365)
chr4 (70-147)||(32081201-32081283)
[»] chr2 (22 HSPs)
chr2 (51-258)||(42925693-42925895)
chr2 (53-164)||(19896911-19897025)
chr2 (51-164)||(12361210-12361324)
chr2 (177-306)||(38592063-38592192)
chr2 (51-164)||(19891524-19891640)
chr2 (51-245)||(25477306-25477500)
chr2 (51-147)||(18345394-18345495)
chr2 (51-147)||(17967981-17968081)
chr2 (51-147)||(17974368-17974468)
chr2 (53-258)||(28603957-28604162)
chr2 (58-212)||(24537047-24537201)
chr2 (51-147)||(30651892-30651993)
chr2 (51-164)||(12797890-12798009)
chr2 (53-164)||(29678639-29678755)
chr2 (180-228)||(15446430-15446478)
chr2 (51-164)||(25496401-25496519)
chr2 (97-248)||(32080258-32080408)
chr2 (51-147)||(20101667-20101768)
chr2 (173-303)||(19577744-19577873)
chr2 (51-146)||(9179743-9179845)
chr2 (51-146)||(9184434-9184536)
chr2 (68-148)||(25637799-25637882)
[»] chr1 (11 HSPs)
chr1 (173-258)||(12260847-12260932)
chr1 (51-258)||(16036477-16036685)
chr1 (51-164)||(23191856-23191972)
chr1 (51-164)||(10136286-10136404)
chr1 (72-248)||(39586119-39586293)
chr1 (51-164)||(51040538-51040656)
chr1 (51-147)||(25844734-25844835)
chr1 (30-117)||(38622200-38622290)
chr1 (173-248)||(46697217-46697291)
chr1 (50-114)||(46697329-46697393)
chr1 (51-164)||(16648646-16648765)
[»] chr3 (17 HSPs)
chr3 (110-248)||(29351108-29351243)
chr3 (51-248)||(3656274-3656475)
chr3 (53-164)||(55432188-55432302)
chr3 (51-164)||(18472967-18473085)
chr3 (51-146)||(757381-757481)
chr3 (41-227)||(7860608-7860797)
chr3 (51-164)||(7570232-7570350)
chr3 (51-132)||(20520954-20521040)
chr3 (58-164)||(27709892-27710000)
chr3 (51-132)||(20175386-20175469)
chr3 (51-164)||(46964974-46965091)
chr3 (53-164)||(55326738-55326854)
chr3 (63-164)||(14437719-14437825)
chr3 (53-164)||(18468173-18468289)
chr3 (51-92)||(23660506-23660547)
chr3 (51-92)||(23665138-23665179)
chr3 (54-147)||(12970828-12970926)
[»] chr6 (13 HSPs)
chr6 (51-147)||(20747314-20747415)
chr6 (51-245)||(25313490-25313686)
chr6 (51-245)||(26200984-26201180)
chr6 (51-258)||(12689843-12690047)
chr6 (51-164)||(17600341-17600456)
chr6 (51-164)||(17963575-17963693)
chr6 (51-116)||(11569709-11569775)
chr6 (51-164)||(16835178-16835297)
chr6 (51-164)||(6406877-6406995)
chr6 (53-164)||(11533721-11533836)
chr6 (53-164)||(11559231-11559346)
chr6 (51-116)||(11428969-11429036)
chr6 (180-228)||(12799113-12799161)
[»] chr7 (11 HSPs)
chr7 (51-245)||(12256907-12257100)
chr7 (173-245)||(9815016-9815087)
chr7 (173-245)||(10716941-10717012)
chr7 (51-147)||(4931201-4931302)
chr7 (51-246)||(13313331-13313528)
chr7 (51-164)||(26342168-26342284)
chr7 (51-116)||(2595782-2595849)
chr7 (51-132)||(42625595-42625681)
chr7 (85-132)||(24777706-24777753)
chr7 (51-245)||(3880853-3881050)
chr7 (51-116)||(4580477-4580544)
[»] chr8 (14 HSPs)
chr8 (51-164)||(15950589-15950707)
chr8 (51-147)||(40124911-40125012)
chr8 (51-116)||(17021268-17021334)
chr8 (51-116)||(17551705-17551771)
chr8 (51-164)||(28564314-28564430)
chr8 (51-164)||(38181299-38181417)
chr8 (51-102)||(1909964-1910015)
chr8 (51-164)||(1808412-1808529)
chr8 (40-147)||(7002623-7002735)
chr8 (51-116)||(17953164-17953230)
chr8 (57-164)||(26780065-26780176)
chr8 (177-223)||(28864202-28864248)
chr8 (65-164)||(33417491-33417595)
chr8 (173-214)||(17797971-17798012)
[»] scaffold0352 (1 HSPs)
scaffold0352 (51-164)||(8070-8188)
[»] scaffold0002 (2 HSPs)
scaffold0002 (51-147)||(5042-5143)
scaffold0002 (51-164)||(442957-443074)
[»] scaffold0011 (1 HSPs)
scaffold0011 (30-116)||(64890-64978)
[»] scaffold0057 (1 HSPs)
scaffold0057 (53-93)||(36158-36198)
[»] scaffold0054 (1 HSPs)
scaffold0054 (53-147)||(30155-30254)


Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 9 - 340
Target Start/End: Complemental strand, 15149782 - 15149454
Alignment:
Q  9 gaagaatattagaaggttaagagattaaaaacaagtaatgggactttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgtcacacaaaatag 108  Q
    |||||| ||||||||||||  |||||||||||||||| ||||||||||||| || ||||||||||||||||||| | |||||||||   | | |||||||    
T  15149782 gaagaaaattagaaggttagaagattaaaaacaagtagtgggactttgatt-aacgttgtatgaatttaaaaaaaaaagtgtgggtcctatataaaatag 15149684  T
Q  109 aacacacatta-tagtgtttaaattaagatatttaattttt-gatatctgataatgatnnnnnnngataatagtaattattattttttattcatgcatat 206  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  15149683 aacacacattaatagtgtttaaattaagatatttaatttttagatatctgataatgataaaa----ataatagtaattattattttttattcatgcatat 15149588  T
Q  207 catttcttataattttagcttacgtttgttgcgataagattgggtatccaacggagcatcctatatttcatccatcgatattcaattagtttgtttcctc 306  Q
    ||||||||||||||||||| ||||||| |||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  15149587 catttcttataattttagcctacgtttattgcgataagattgagtatccaatggagtatcctatatttcatccatcgatattcaattagtttgtttcctc 15149488  T
Q  307 aatatttgtatttgtagttattgagggttggttt 340  Q
    ||||||||||||||||||||||||||||||||||    
T  15149487 aatatttgtatttgtagttattgagggttggttt 15149454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 63 - 248
Target Start/End: Complemental strand, 17159444 - 17159257
Alignment:
Q  63 tgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaataga--acacacatta-tagtgtttaaattaagatatttaattttt-gatatctg 156  Q
    ||||||||||||| |||||||||| |||||||||  |||| ||||||||  |||||||||| |||||||| |||| || ||||||||||||  ||| |||    
T  17159444 tgttgtatgaattgaaaaaatagaatgtgggtgtcccacataaaatagaagacacacattagtagtgttttaattgaggtatttaatttttaaatacctg 17159345  T
Q  157 ataatgatnnnnnnngataatagtaattattattttttattcatgcatatcatttcttataattttagcttacgtttgttgcgataagattg 248  Q
    ||||||||        ||||||||||| ||||||||||||||| | |||||| ||   ||| | || |||||||||||||| ||||||||||    
T  17159344 ataatgataaaa----ataatagtaatgattattttttattcaaggatatcaatttccatagtcttggcttacgtttgttgtgataagattg 17159257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 55 - 306
Target Start/End: Complemental strand, 17162932 - 17162680
Alignment:
Q  55 tgatttaatgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaataga--acacacatta-tagtgtttaaattaagatatttaattttt- 148  Q
    |||| |||||||||||||||| |||||||||| |||||| ||  |||| ||||||||  |||||||||| | ||||||||||| || ||||||||||||     
T  17162932 tgatctaatgttgtatgaattgaaaaaatagaatgtgggagtcccacataaaatagaacacacacattagtggtgtttaaattgaggtatttaattttta 17162833  T
Q  149 gatatctgataatgatnnnnnnngataatagtaattattattttttattcatgcatatcatttcttataattttagcttacgtttgttgcgataagattg 248  Q
     ||| |||||||||||        ||||||||||| ||| ||||||||||| | |||||| ||   ||| | ||| ||||||||||||| ||||||||||    
T  17162832 aatacctgataatgataaaa----ataatagtaatgatt-ttttttattcaaggatatcactttccatagtcttaacttacgtttgttgtgataagattg 17162738  T
Q  249 ggtatccaacggagcatcctatatttcatccatcgatattcaattagtttgtttcctc 306  Q
     |  |||||| |||  |||||| |||  | |||  |||||||||| ||||||||||||    
T  17162737 agagtccaactgagtttcctatcttttcttcattcatattcaattcgtttgtttcctc 17162680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 23757181 - 23757248
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaatagaacacaca 116  Q
    |||| ||||||||||||| |||||| ||||||||||||||||| ||  ||||||||||||||||||||    
T  23757181 acttagatttaatgttgtgtgaattgaaaaaatagagtgtgggggtcccacacaaaatagaacacaca 23757248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 23822637 - 23822704
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaatagaacacaca 116  Q
    |||| ||||||||||||| |||||| ||||||||||||||||| ||  ||||||||||||||||||||    
T  23822637 acttagatttaatgttgtgtgaattgaaaaaatagagtgtgggggtcccacacaaaatagaacacaca 23822704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 164
Target Start/End: Complemental strand, 26668357 - 26668239
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaataga--acacacatta-tagtgtttaaattaagatatttaatt 145  Q
    |||||||| ||||||||| |||||| ||||||||||||||||| ||  |||| ||||||||  |||||||||| |||||||||||||  | |||||||||    
T  26668357 actttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaatt 26668258  T
Q  146 tttgatatctgataatgat 164  Q
    ||  |||  ||||||||||    
T  26668257 ttaaatacttgataatgat 26668239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 164
Target Start/End: Complemental strand, 26939954 - 26939836
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaataga--acacacatta-tagtgtttaaattaagatatttaatt 145  Q
    |||||||| ||||||||| |||||| ||||||||||||||||| ||  |||| ||||||||  |||||||||| |||||||||||||  | |||||||||    
T  26939954 actttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaatt 26939855  T
Q  146 tttgatatctgataatgat 164  Q
    ||  |||  ||||||||||    
T  26939854 ttaaatacttgataatgat 26939836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 164
Target Start/End: Original strand, 29166990 - 29167108
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgtc--acacaaaataga--acacacatta-tagtgtttaaattaagatatttaatt 145  Q
    |||||||||||||||||| |||||| ||||||||||||||| | |||  ||| ||||||||  |||||||||| |||||||||||||  | |||||||||    
T  29166990 actttgatttaatgttgtgtgaattgaaaaaatagagtgtgagggtcctacataaaatagaacacacacattagtagtgtttaaattgtggtatttaatt 29167089  T
Q  146 tttgatatctgataatgat 164  Q
    ||  |||  ||||||||||    
T  29167090 ttaaatacttgataatgat 29167108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 164
Target Start/End: Complemental strand, 36430588 - 36430479
Alignment:
Q  60 taatgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaataga--acacacatta-tagtgtttaaattaagatatttaatttttgatatc 154  Q
    ||||||||| |||||| ||||||||||||||||| ||  |||| ||||||||  |||||||||| |||||||||||||| | |||||||||||  ||||     
T  36430588 taatgttgtgtgaattgaaaaaatagagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattatggtatttaattttaaatatt 36430489  T
Q  155 tgataatgat 164  Q
    || |||||||    
T  36430488 tggtaatgat 36430479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 164
Target Start/End: Original strand, 6154451 - 6154567
Alignment:
Q  53 tttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaataga--acacacatta-tagtgtttaaattaagatatttaatttt 147  Q
    |||||| ||||||||| |||||| ||||||||||||||||| ||  |||| ||||||||  |||||||||| |||||||||||||  | |||||||||||    
T  6154451 tttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaatttt 6154550  T
Q  148 tgatatctgataatgat 164  Q
      |||  ||||||||||    
T  6154551 aaatacttgataatgat 6154567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 51 - 247
Target Start/End: Original strand, 35678915 - 35679112
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgtcacaca--aaatagaacacaca--tta-tagtgtttaaattaagatatttaatt 145  Q
    |||||||| || |||||| |||||| ||||||||||||||  | ||| ||||  ||||||||||||||  ||| ||||||||||||   | ||||| |||    
T  35678915 actttgatctagtgttgtgtgaattgaaaaaatagagtgtaagagtcccacataaaatagaacacacacattagtagtgtttaaatagtggtattttatt 35679014  T
Q  146 tttgatatctgataatgatnnnnnnngataatagtaattattattttttattcatgcatatcatttcttataattttagcttacgtttgttgcgataaga 245  Q
    ||  ||| |||||||||||        |||||| | |||||||||||||||||||| |||| | |||  |||||||||| ||| |||||||| |||||||    
T  35679015 ttaaatacctgataatgatgcaa----ataataattattattattttttattcatggatattacttcccataattttaggttatgtttgttgtgataaga 35679110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 132
Target Start/End: Original strand, 10759357 - 10759464
Alignment:
Q  30 agattaaaaacaagtaatgggactttgatttaatgttgtatgaatttaaaaaatagagtgt--gggtgtcacacaaaatagaac--acacatta-tagtg 124  Q
    |||||||| |||||||||   | |||||||||||||||| |||||| ||||||||||||||  ||||  |||| ||||||||||  |||||||| |||||    
T  10759357 agattaaacacaagtaattatattttgatttaatgttgtgtgaattaaaaaaatagagtgtaggggtcccacataaaatagaacagacacattagtagtg 10759456  T
Q  125 tttaaatt 132  Q
    ||||||||    
T  10759457 tttaaatt 10759464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 173 - 277
Target Start/End: Complemental strand, 4872843 - 4872739
Alignment:
Q  173 ataatagtaattattattttttattcatgcatatcatttcttataattttagcttacgtttgttgcgataagattgggtatccaacggagcatcctatat 272  Q
    |||||| ||||||||||| |||||||||| |||||| | |  |||| ||||| ||| |||||||| |||||||||| | ||||||| ||   ||||||||    
T  4872843 ataataataattattattctttattcatggatatcactccccataactttaggttatgtttgttgtgataagattgagaatccaactgaatttcctatat 4872744  T
Q  273 ttcat 277  Q
    |||||    
T  4872743 ttcat 4872739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 55 - 164
Target Start/End: Complemental strand, 7452830 - 7452716
Alignment:
Q  55 tgatttaatgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaataga--acacacatta-tagtgtttaaattaagatatttaatttttg 149  Q
    |||| ||||||||| |||||| ||||||||||||||||| ||  |||| ||||||||  |||||||||| |||||||||||||  | |||||||||||      
T  7452830 tgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaa 7452731  T
Q  150 atatctgataatgat 164  Q
    |||  ||||||||||    
T  7452730 atacttgataatgat 7452716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 51 - 258
Target Start/End: Original strand, 9725790 - 9725991
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaa-tagagtgtgggtgtcacaca--aaatagaacacacattatagtgtttaaattaagatatttaatttt 147  Q
    |||||||| || |||||| |||||| |||||| |||||||||| |||| ||||  ||||||||||||||    |||||||||||   | |||||||||||    
T  9725790 actttgatatagtgttgtgtgaattgaaaaaaatagagtgtggatgtcccacataaaatagaacacaca----agtgtttaaatagtggtatttaatttt 9725885  T
Q  148 tgatatctgataatgatnnnnnnngataatagtaattattattttttattcatgcatatcatttcttataattttagcttacgtttgttgcgataagatt 247  Q
      ||| | |||||||||       ||||||| |||| || |||||||||||||| |||||| || | |||||||||| ||| |||| ||| |||||||||    
T  9725886 aaataccggataatgatgaa----gataataataataataattttttattcatg-atatcacttttcataattttaggttatgtttattgtgataagatt 9725980  T
Q  248 gggtatccaac 258  Q
    | | |||||||    
T  9725981 gagaatccaac 9725991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 51 - 164
Target Start/End: Original strand, 37247816 - 37247934
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaataga--acacacatta-tagtgtttaaattaagatatttaatt 145  Q
    |||||||| ||||||||| |||||| ||||||||||||||||| ||  | || ||||||||  |||||||||| |||||||||||||  | |||||||||    
T  37247816 actttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccgcataaaatagaacacacacattagtagtgtttaaattgtggtatttaatt 37247915  T
Q  146 tttgatatctgataatgat 164  Q
    ||  |||  ||||||||||    
T  37247916 ttaaatacttgataatgat 37247934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 37646072 - 37646139
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaatagaacacaca 116  Q
    |||||||| ||||||||| |||||| ||||||||||||||||| ||  |||| |||||||||||||||    
T  37646072 actttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccacataaaatagaacacaca 37646139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 37536954 - 37537020
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgt-gggtgtcacacaaaatagaacacaca 116  Q
    |||||||| ||||||||| |||||| |||||||||||||| ||||  |||| |||||||||||||||    
T  37536954 actttgatataatgttgtgtgaattgaaaaaatagagtgtggggtcccacataaaatagaacacaca 37537020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 147
Target Start/End: Complemental strand, 4872961 - 4872860
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaatagaacacac---attatagtgtttaaattaagatatttaatt 145  Q
    ||||||||||| |||||| |||||| ||||||||||||||||| ||  || | ||||||||||||||   ||  ||||||||||||   |||||||||||    
T  4872961 actttgatttagtgttgtgtgaattgaaaaaatagagtgtgggggttccatataaaatagaacacacacaatagtagtgtttaaatagtgatatttaatt 4872862  T
Q  146 tt 147  Q
    ||    
T  4872861 tt 4872860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 36424713 - 36424650
Alignment:
Q  55 tgatttaatgttgtatgaatttaaaaaatagagtgt--gggtgtcacacaaaatagaacacaca 116  Q
    |||| ||||||||| |||||| ||||||||||||||  |||| ||||| |||||||||||||||    
T  36424713 tgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtctcacataaaatagaacacaca 36424650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 39519464 - 39519397
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaatagaacacaca 116  Q
    |||||||| ||||||||| |||||| ||||||||||||||||| ||  | || |||||||||||||||    
T  39519464 actttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccgcataaaatagaacacaca 39519397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 39524103 - 39524036
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgtc--acacaaaatagaacacaca 116  Q
    |||||||| ||||||||| |||||| ||||||||||||||||| |||   || |||||||||||||||    
T  39524103 actttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtccagcataaaatagaacacaca 39524036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 164
Target Start/End: Complemental strand, 40148894 - 40148804
Alignment:
Q  77 aaaaaatagagtgtgggtgtcacacaaaatagaac--acacatta-tagtgtttaaattaagatatttaatttttgatatctgataatgat 164  Q
    ||||||||||||||||||  |||| ||||||||||  |||||||| |||||||||||||  | |||||||||||  |||  ||||||||||    
T  40148894 aaaaaatagagtgtgggtcccacataaaatagaacaaacacattagtagtgtttaaattgcggtatttaattttaaatacttgataatgat 40148804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 147
Target Start/End: Original strand, 20180172 - 20180271
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgtcacacaaaataga--acacacatta-tagtgtttaaattaagatatttaatttt 147  Q
    ||||| || ||||||||| |||||| | |||||||  ||||||   |||| ||||||||  |||||||||| |||||||||||||| | |||||||||||    
T  20180172 actttaatctaatgttgtgtgaattgagaaaataggatgtgggacccacataaaatagaacacacacattagtagtgtttaaattacggtatttaatttt 20180271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 201
Target Start/End: Original strand, 22832659 - 22832687
Alignment:
Q  173 ataatagtaattattattttttattcatg 201  Q
    |||||||||||||||||||||||||||||    
T  22832659 ataatagtaattattattttttattcatg 22832687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 51 - 258
Target Start/End: Complemental strand, 19103045 - 19102837
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgtcacaca--aaatagaacacaca---ttatagtgtttaaattaagatatttaatt 145  Q
    |||||||| || |||||| |||||| ||||||||||||||||  ||| ||||  ||||||||||||||   | |||||||||||||   |||||||||||    
T  19103045 actttgatctagtgttgtgtgaattgaaaaaatagagtgtggaggtcccacataaaatagaacacacacattaatagtgtttaaatagtgatatttaatt 19102946  T
Q  146 tttgatatctgataatgatnnnnnnngataatagtaattattattttttattcatgcatatcatttcttataattttagcttacgtttgttgcgataaga 245  Q
    ||  ||| |||||||||||        |||||| ||||||||||| |||| ||||| |||||| |||| |||||||||| ||| |||||||| |||||||    
T  19102945 ttaaatacctgataatgatgaaa----ataataataattattattctttaatcatggatatcacttctcataattttaggttatgtttgttgtgataaga 19102850  T
Q  246 ttgggtatccaac 258  Q
    ||| | |||||||    
T  19102849 ttgagaatccaac 19102837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 164
Target Start/End: Original strand, 32220583 - 32220699
Alignment:
Q  53 tttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaatagaac--acacatta-tagtgtttaaattaagatatttaatttt 147  Q
    |||||| |||| |||| |||||| ||||||||||||||||| ||  |||| ||||||||||  |||||||| |||||||||||||  |||||||||||||    
T  32220583 tttgatctaatattgtgtgaattaaaaaaatagagtgtgggggtcccacataaaatagaacatacacattattagtgtttaaattccgatatttaatttt 32220682  T
Q  148 tgatatctgataatgat 164  Q
      |||| ||||||||||    
T  32220683 aaatatttgataatgat 32220699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 164
Target Start/End: Complemental strand, 8694792 - 8694674
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaataga--acacacatta-tagtgtttaaattaagatatttaatt 145  Q
    |||||||| ||||||||| |||||| ||||||||||||||||| ||  |||| ||||||||  |||||||||| |||||||||||||  | |||||||||    
T  8694792 actttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaatt 8694693  T
Q  146 tttgatatctgataatgat 164  Q
    ||  |||  ||||||||||    
T  8694692 ttaaatacttgataatgat 8694674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 164
Target Start/End: Complemental strand, 16422125 - 16422007
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaatagaacaca--catta-tagtgtttaaattaagatatttaatt 145  Q
    |||||||| ||||||||| |||||| ||||||||||||||||| ||  |||| |||||||||||||  ||||| |||||||||||||  | |||||||||    
T  16422125 actttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccacataaaatagaacacacgcattagtagtgtttaaattgcggtatttaatt 16422026  T
Q  146 tttgatatctgataatgat 164  Q
    ||  |||  ||||||||||    
T  16422025 ttcaatacttgataatgat 16422007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 175 - 303
Target Start/End: Complemental strand, 16948954 - 16948827
Alignment:
Q  175 aatagtaattattattttttattcatgcatatcatttcttataattttagcttacgtttgttgcgataagattgggtatccaacggagcatcctatattt 274  Q
    |||||||||||||| |||| | ||||  ||||||||||  |||||||||||||| ||| |||  |||||||||| | ||| ||| |||  |||||||| |    
T  16948954 aatagtaattattagtttt-actcattgatatcatttcccataattttagcttatgttggttatgataagattgagaatcgaactgagtttcctatatct 16948856  T
Q  275 catccatcgatattcaattagtttgtttc 303  Q
    | | |||| |||| |||||||||||||||    
T  16948855 ccttcatccatatccaattagtttgtttc 16948827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 147
Target Start/End: Original strand, 12822927 - 12823028
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaatagaa--cacacatta-tagtgtttaaattaagatatttaatt 145  Q
    |||||||| ||||||||| |||||| ||||||||||||||||| ||  |||| |||||||||  ||||||||| ||||||||||| |  | |||||||||    
T  12822927 actttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccacataaaatagaactcacacattagtagtgtttaaactgtggtatttaatt 12823026  T
Q  146 tt 147  Q
    ||    
T  12823027 tt 12823028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 248
Target Start/End: Complemental strand, 12875360 - 12875285
Alignment:
Q  173 ataatagtaattattattttttattcatgcatatcatttcttataattttagcttacgtttgttgcgataagattg 248  Q
    ||||||||||||||||||||||| ||||| |||||| |||  |||||||||| ||| ||| |||| ||||| ||||    
T  12875360 ataatagtaattattattttttactcatgaatatcacttcccataattttaggttatgttggttgtgataacattg 12875285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 147
Target Start/End: Complemental strand, 31274593 - 31274492
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaataga--acacacatta-tagtgtttaaattaagatatttaatt 145  Q
    |||||||| ||||||||| |||||| ||||||||||||||||| ||  | || ||||||||  |||||||||| |||||||||||||  | |||||||||    
T  31274593 actttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccgcataaaatagaacacacacattagtagtgtttaaattgtggtatttaatt 31274494  T
Q  146 tt 147  Q
    ||    
T  31274493 tt 31274492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 147
Target Start/End: Original strand, 31728385 - 31728483
Alignment:
Q  53 tttgatttaatgttgtatgaatttaaaaaatagagtgt-gggtgtcacacaaaataga--acacacatta-tagtgtttaaattaagatatttaatttt 147  Q
    |||||| ||||||||| |||||| |||||||||||||| ||||  |||| ||||||||  |||||||||| |||||||||||||  | |||||||||||    
T  31728385 tttgatctaatgttgtgtgaattgaaaaaatagagtgtggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaatttt 31728483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 147
Target Start/End: Original strand, 37258880 - 37258981
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaataga--acacacatta-tagtgtttaaattaagatatttaatt 145  Q
    |||||||| ||||||||| |||||| ||||||||||||||||| ||  | || ||||||||  |||||||||| |||||||||||||  | |||||||||    
T  37258880 actttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccgcataaaatagaacacacacattagtagtgtttaaattgtggtatttaatt 37258979  T
Q  146 tt 147  Q
    ||    
T  37258980 tt 37258981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 147
Target Start/End: Original strand, 37263580 - 37263681
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaataga--acacacatta-tagtgtttaaattaagatatttaatt 145  Q
    |||||||| ||||||||| |||||| ||||||||||||||||| ||  | || ||||||||  |||||||||| |||||||||||||  | |||||||||    
T  37263580 actttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccgcataaaatagaacacacacattagtagtgtttaaattgtggtatttaatt 37263679  T
Q  146 tt 147  Q
    ||    
T  37263680 tt 37263681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 164
Target Start/End: Original strand, 5925821 - 5925930
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgtcacacaaaatagaacacacatta-tagtgtttaaattaagatatttaatttttg 149  Q
    |||||||| ||||||||| |||||| ||||||| |     ||||  |||| |||||||||||||||||| |||||||||||||| | |||||||||||      
T  5925821 actttgatataatgttgtgtgaattgaaaaaatgg-----gggtcccacataaaatagaacacacattagtagtgtttaaattatggtatttaattttaa 5925915  T
Q  150 atatctgataatgat 164  Q
    |||  ||||||||||    
T  5925916 atacttgataatgat 5925930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 164
Target Start/End: Complemental strand, 55252724 - 55252605
Alignment:
Q  51 actttgatttaatgttgtatgaatt-taaaaaatagagtgtg--ggtgtcacacaaaataga--acacacatta-tagtgtttaaattaagatatttaat 144  Q
    |||||||||||||||||| ||||||  |||||||||||||||  |||  |||| ||||||||  |||||||||| |||||||||||||  | ||||||||    
T  55252724 actttgatttaatgttgtgtgaattgaaaaaaatagagtgtggtggtcccacataaaatagaacacacacattagtagtgtttaaattgcggtatttaat 55252625  T
Q  145 ttttgatatctgataatgat 164  Q
    |||  |||  ||||||||||    
T  55252624 tttaaatacttgataatgat 55252605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 247
Target Start/End: Complemental strand, 2820869 - 2820676
Alignment:
Q  53 tttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaataga--acacacatta-tagtgtttaaattaagatatttaatttt 147  Q
    |||||| || |||||| |||||| ||||| ||||||||||| ||  |||| ||||||||  |||||||||| |||||||||||||  | |||||||||||    
T  2820869 tttgatctagtgttgtgtgaattgaaaaattagagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgcggtatttaatttt 2820770  T
Q  148 tgatatctgataatgatnnnnnnngataatagtaattattattttttattcatgcatatcatttcttataattttagcttacgtttgttgcgataagatt 247  Q
       ||| ||||||||||        |||||||||||||||| ||||||||  || |||||| |||  |||| ||||||||| ||| |||| |||||||||    
T  2820769 aattatttgataatgataaaa----ataatagtaattatta-tttttatt-gtgaatatcacttcccataaatttagcttatgttggttgtgataagatt 2820676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 8029316 - 8029419
Alignment:
Q  16 attagaaggttaagagattaaaaac-aagtaatgggactttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaatagaaca 112  Q
    ||||||||||||  |||||||| || |||||||   |||||||| || | |||| |||||| ||||||||||||||||| ||  |||| |||||||||||    
T  8029316 attagaaggttagaagattaaacaccaagtaattaaactttgatctagtattgtgtgaattgaaaaaatagagtgtgggggtcccacataaaatagaaca 8029415  T
Q  113 caca 116  Q
    ||||    
T  8029416 caca 8029419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 164
Target Start/End: Complemental strand, 27183264 - 27183196
Alignment:
Q  97 cacacaaaatagaacacacatta-tagtgtttaaattaagatatttaatttttgatatctgataatgat 164  Q
    |||| |||||||||||||||||| |||||||||||||| | |||||||||||  |||  ||||||||||    
T  27183264 cacataaaatagaacacacattagtagtgtttaaattatggtatttaattttaaatacttgataatgat 27183196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 29349346 - 29349418
Alignment:
Q  173 ataatagtaattattattttttattcatgcatatcatttcttataattttagcttacgtttgttgcgataaga 245  Q
    |||||| ||||||||||||||||||| || ||||||||||  |||| ||||||||| | |||||  |||||||    
T  29349346 ataatattaattattattttttattcgtgaatatcatttcccataaatttagcttatggttgttatgataaga 29349418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 147
Target Start/End: Complemental strand, 40409023 - 40408925
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgtcacacaaaatagaacacac--atta-tagtgtttaaattaagatatttaatttt 147  Q
    |||||||| |||||||||||||||| ||||||||| ||| ||||  || | ||||||||||||||  |||| |||||||||||||  | |||||||||||    
T  40409023 actttgatctaatgttgtatgaattaaaaaaatagtgtg-gggtaccaaataaaatagaacacacatattattagtgtttaaattgcggtatttaatttt 40408925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 147
Target Start/End: Complemental strand, 51699008 - 51698907
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaataga--acacacatta-tagtgtttaaattaagatatttaatt 145  Q
    |||||||  ||||||||  |||||| ||||||||||||||||| ||  |||| ||||||||  |||||||||| |||||||||||||  | |||||||||    
T  51699008 actttgaactaatgttgcgtgaattgaaaaaatagagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgcggtatttaatt 51698909  T
Q  146 tt 147  Q
    ||    
T  51698908 tt 51698907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 5270440 - 5270506
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtggg-tgtcacacaaaatagaacacaca 116  Q
    |||||||| ||||||||| |||||| |||||||||| |||||| |  |||| |||||||||||||||    
T  5270440 actttgatctaatgttgtgtgaattgaaaaaatagaatgtggggtcccacataaaatagaacacaca 5270506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 33462376 - 33462457
Alignment:
Q  53 tttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgtcac-acaaaatagaacacacatta-tagtgtttaaatt 132  Q
    |||||| ||||||||| |||||| ||||||||||||||||  ||| | | ||||||  |||||||||| |||||||||||||    
T  33462376 tttgatctaatgttgtgtgaattgaaaaaatagagtgtggaggtcccaataaaataagacacacattagtagtgtttaaatt 33462457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 258
Target Start/End: Original strand, 48275976 - 48276061
Alignment:
Q  173 ataatagtaattattattttttattcatgcatatcatttcttataattttagcttacgtttgttgcgataagattgggtatccaac 258  Q
    |||||| ||||||||||| |||||||||  |||||| |||   ||||||||| ||| |||||| | |||||||||| | |||||||    
T  48275976 ataataataattattattgtttattcatagatatcacttcccgtaattttaggttatgtttgtcgtgataagattgagaatccaac 48276061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 19907204 - 19907133
Alignment:
Q  173 ataatagtaattattattttttattcatgcatatcatttcttataattttagcttacgtttgttgcgataaga 245  Q
    ||||||| ||||||||||||| |||| || |||||| |||  |||| ||||||||| | ||||||||||||||    
T  19907204 ataatagaaattattattttt-attcgtgaatatcacttcccataaatttagcttatgattgttgcgataaga 19907133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 19907365 - 19907301
Alignment:
Q  53 tttgatttaatgttgtatgaatttaaaaaatagagtgtggg-tgtcacacaaaatagaacacaca 116  Q
    |||||| || |||||| |||||| |||||||| |||||||| | ||||| |||||||||||||||    
T  19907365 tttgatctagtgttgtgtgaattgaaaaaataaagtgtggggtctcacataaaatagaacacaca 19907301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 147
Target Start/End: Original strand, 32081201 - 32081283
Alignment:
Q  70 tgaatttaaaaaatagagtgtgggtgtcacac--aaaatagaac--acacatta-tagtgtttaaattaagatatttaatttt 147  Q
    |||||| ||||||||||||||||  ||| |||  ||||||||||  |||||||| |||||||||||||  |||||||||||||    
T  32081201 tgaattgaaaaaatagagtgtggaggtcccacgtaaaatagaactcacacattagtagtgtttaaattgtgatatttaatttt 32081283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 51 - 258
Target Start/End: Original strand, 42925693 - 42925895
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgtcacac--aaaatagaacacacatta-tagtgtttaaattaagatatttaatttt 147  Q
    |||||||| || |||||| |||||| ||||||||||||||||  ||| |||  |||||||||||||||||| ||||||||||||   |||||||||||||    
T  42925693 actttgatctagtgttgtgtgaattgaaaaaatagagtgtggaggtcccacgtaaaatagaacacacattagtagtgtttaaatagtgatatttaatttt 42925792  T
Q  148 tgatatctgataatgatnnnnnnngataatagtaattattattttttattcatgcatatcatttcttataattttagcttacgtttgttgcgataagatt 247  Q
      ||| |||||||||||        |||||| ||||||||||| |||||||||| |||||| |||  |||||||||| |||    ||||| |||||||||    
T  42925793 aaatacctgataatgatgaaa----ataataataattattattatttattcatggatatcacttcccataattttaggtta----tgttgtgataagatt 42925884  T
Q  248 gggtatccaac 258  Q
    | | |||||||    
T  42925885 gagaatccaac 42925895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 164
Target Start/End: Complemental strand, 19897025 - 19896911
Alignment:
Q  53 tttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaatagaacacacatta-tagtgtttaaattaagatatttaatttttg 149  Q
    |||||| ||||||||| |||||| ||||||||||| ||||| ||  |||| |||||||||||||||||| |||||||||||||  | |||||||||||      
T  19897025 tttgatataatgttgtgtgaattgaaaaaatagagcgtgggggtcccacataaaatagaacacacattagtagtgtttaaattgcggtatttaattttaa 19896926  T
Q  150 atatctgataatgat 164  Q
    |||| ||||||||||    
T  19896925 atatttgataatgat 19896911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 51 - 164
Target Start/End: Complemental strand, 12361324 - 12361210
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgtcacacaaaatagaacacacatta-tagtgtttaaattaagatatttaatttttg 149  Q
    |||||||| ||||||||| |||||| |||||||||| |||||||  |||| ||||||||| |||||||| |||||||||||||  | |||||||||||      
T  12361324 actttgatctaatgttgtgtgaattgaaaaaatagaatgtgggttccacataaaatagaagacacattagtagtgtttaaattgtggtatttaattttaa 12361225  T
Q  150 atatctgataatgat 164  Q
    |||  ||||||||||    
T  12361224 ataattgataatgat 12361210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 177 - 306
Target Start/End: Complemental strand, 38592192 - 38592063
Alignment:
Q  177 tagtaattattattttttattcatgcatatcatttcttataattttagcttacgtttgttgcgataagattgggtatccaacggagcatcctatatttca 276  Q
    |||||||||| |||||||||||| |||||||  ||   ||||||||| |||| |||  ||| |||||||||| ||||| ||  ||| ||||||||||||     
T  38592192 tagtaattatcattttttattcaagcatatcgctttccataattttaacttatgttgattgtgataagattgagtatctaattgagtatcctatatttcc 38592093  T
Q  277 tccatcgatattcaattagtttgtttcctc 306  Q
    |||||  ||||||| |||||||||||||||    
T  38592092 tccattcatattcatttagtttgtttcctc 38592063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 51 - 164
Target Start/End: Original strand, 19891524 - 19891640
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgtcacaca--aaatagaacacacatta-tagtgtttaaattaagatatttaatttt 147  Q
    |||||||| |||| |||| |||||| |||||||||| |||||| ||| ||||  ||||||||||||||||| |||||||||||||  | |||||||||||    
T  19891524 actttgatctaatcttgtgtgaattgaaaaaatagaatgtgggagtcccacataaaatagaacacacattattagtgtttaaattgtggtatttaatttt 19891623  T
Q  148 tgatatctgataatgat 164  Q
      |||  ||||||||||    
T  19891624 aaatacttgataatgat 19891640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 245
Target Start/End: Original strand, 25477306 - 25477500
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtg--ggtgtcacacaaaataga--acacacatta-tagtgtttaaattaagatatttaatt 145  Q
    ||||||||||||||||||  ||||| |||||||||||||||  ||| | ||| ||||||||  |||||||||| |||||||||||||  | |||||||||    
T  25477306 actttgatttaatgttgtgcgaattaaaaaaatagagtgtggtggtcttacataaaatagaacacacacattagtagtgtttaaattgcggtatttaatt 25477405  T
Q  146 tttgatatctgataatgatnnnnnnngataatagtaattattattttttattcatgcatatcatttcttataattttagcttacgtttgttgcgataaga 245  Q
    ||  |||  ||||||||||        |||||||||||||||| |||||||||  | |||||| ||  ||||| ||||||||| | | ||||||||||||    
T  25477406 ttaaatacttgataatgataaaa----ataatagtaattatta-tttttattcgagaatatcactttctataaatttagcttatggtggttgcgataaga 25477500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 147
Target Start/End: Complemental strand, 18345495 - 18345394
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaataga--acacacatta-tagtgtttaaattaagatatttaatt 145  Q
    |||||||| ||||||||| |||||| ||||||||||||||||| ||  |||| ||||||||  |||||||||| |||||||||||||  | |||||||||    
T  18345495 actttgatctaatgttgtgtgaattaaaaaaatagagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaatt 18345396  T
Q  146 tt 147  Q
    ||    
T  18345395 tt 18345394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 147
Target Start/End: Original strand, 17967981 - 17968081
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgt-gggtgtcacacaaaatagaacacac--atta-tagtgtttaaattaagatatttaattt 146  Q
    |||||||| ||||||||| |||||| |||||||||||||| ||||  |||| ||||||||||||||  |||| |||||||||||||  | ||||||||||    
T  17967981 actttgatctaatgttgtgtgaattaaaaaaatagagtgtggggtcccacataaaatagaacacacatattagtagtgtttaaattgtggtatttaattt 17968080  T
Q  147 t 147  Q
    |    
T  17968081 t 17968081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 147
Target Start/End: Original strand, 17974368 - 17974468
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgg-gtgtcacacaaaataga--acacacatta-tagtgtttaaattaagatatttaattt 146  Q
    |||||||| ||||||||| |||||| |||||||||||||||| ||  |||| ||||||||  |||||||||| |||||||||||||  | ||||||||||    
T  17974368 actttgatctaatgttgtgtgaattgaaaaaatagagtgtggtgtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaattt 17974467  T
Q  147 t 147  Q
    |    
T  17974468 t 17974468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 258
Target Start/End: Complemental strand, 28604162 - 28603957
Alignment:
Q  53 tttgatttaatgttgtatgaatttaaaaaatagagtgtg-ggtgtcacacaaaataga--acacacattat-agtgtttaaattaagatatttaattttt 148  Q
    |||||| || |||||| |||||| |||||||||||| || |||  |||| ||||||||  ||||| ||||| |||||||||||   |||||||||||||     
T  28604162 tttgatctagtgttgtgtgaattgaaaaaatagagtatgcggtcccacataaaatagattacacagattatcagtgtttaaatagtgatatttaatttta 28604063  T
Q  149 gatatctgataatgatnnnnnnngataatagtaattattattttttattcatgcatatcatttcttataattttagcttacgtttgttgcgataagattg 248  Q
     |||  ||||||||||        |||||| |||| ||||||||||||||||| |||||| |||  |||||||||| ||| ||| |||  ||||||||||    
T  28604062 aatacatgataatgatgaaa----ataataataataattattttttattcatggatatcacttcccataattttaggttatgttcgttatgataagattg 28603967  T
Q  249 ggtatccaac 258  Q
     | |||||||    
T  28603966 agaatccaac 28603957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 58 - 212
Target Start/End: Original strand, 24537047 - 24537201
Alignment:
Q  58 tttaatgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaatagaacac--acatta-tagtgtttaaattaagatatttaatttttgata 152  Q
    ||||||||||| |||||| ||||||||||||||||| ||  |||| |||||| |||||  |||||| ||||||||||| || | |||||||||||  |||    
T  24537047 tttaatgttgtgtgaattgaaaaaatagagtgtgggggtcccacataaaatataacacatacattagtagtgtttaaactacggtatttaattttaaata 24537146  T
Q  153 tctgataatgatnnnnnnngataatagtaattattattttttattcatgcatatcatttc 212  Q
      ||||||||||        |||||||||||||||| ||||||||| || ||||||||||    
T  24537147 cttgataatgataaaa----ataatagtaattatta-tttttattcgtgaatatcatttc 24537201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 147
Target Start/End: Complemental strand, 30651993 - 30651892
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaataga--acacacatta-tagtgtttaaattaagatatttaatt 145  Q
    |||||||| ||||||||| |||||| ||||||||||||||||| ||  | || ||||||||  |||||||||| |||||||||||||  | |||||||||    
T  30651993 actttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccgcataaaatagaacacacacattagtagtgtttaaattgtggtatttaatt 30651894  T
Q  146 tt 147  Q
    ||    
T  30651893 tt 30651892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 164
Target Start/End: Complemental strand, 12798009 - 12797890
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtg---ggtgtcacacaaaataga--acacacatta-tagtgtttaaattaagatatttaat 144  Q
    |||||||| ||||||||| |||||| |||||||||||||||   |||  |||| ||||||||  |||||||||| |||||||||||||  | ||||||||    
T  12798009 actttgatctaatgttgtgtgaattgaaaaaatagagtgtgggaggtcccacataaaatagaacacacacattagtagtgtttaaattgcggtatttaat 12797910  T
Q  145 ttttgatatctgataatgat 164  Q
    |||  |||  ||||||||||    
T  12797909 tttaaatacttgataatgat 12797890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 164
Target Start/End: Complemental strand, 29678755 - 29678639
Alignment:
Q  53 tttgatttaatgttgtatgaatttaaaaaatagagtgt--gggtgtcacacaaaataga--acacacatta-tagtgtttaaattaagatatttaatttt 147  Q
    |||||| ||||||||| |||||| ||||||||||||||  || |  |||| ||||||||  |||||||||| |||||||||||||  | |||||||||||    
T  29678755 tttgatctaatgttgtgtgaattgaaaaaatagagtgtagggatcccacataaaatagaacacacacattagtagtgtttaaattgcggtatttaatttt 29678656  T
Q  148 tgatatctgataatgat 164  Q
      |||| ||||||||||    
T  29678655 aaatatttgataatgat 29678639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 15446430 - 15446478
Alignment:
Q  180 taattattattttttattcatgcatatcatttcttataattttagctta 228  Q
    |||||||||||||||||||||| |||||| |||  ||||||||||||||    
T  15446430 taattattattttttattcatggatatcacttcacataattttagctta 15446478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 164
Target Start/End: Original strand, 25496401 - 25496519
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtg--ggtgtcacacaaaataga--acacacatta-tagtgtttaaattaagatatttaatt 145  Q
    |||||||| |||| |||| |||||| |||||||||||||||  |||  |||| ||||||||  |||||||||| |||||||||||||  | |||||||||    
T  25496401 actttgatctaatattgtgtgaattgaaaaaatagagtgtggaggtcccacataaaatagaacacacacattagtagtgtttaaattgcggtatttaatt 25496500  T
Q  146 tttgatatctgataatgat 164  Q
    ||  |||  ||||||||||    
T  25496501 ttaaatacttgataatgat 25496519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 248
Target Start/End: Complemental strand, 32080408 - 32080258
Alignment:
Q  97 cacacaaaatagaacacacatt---atagtgtttaaattaagatatttaatttttga-tatctgataatgatnnnnnnngataatagtaattattatttt 192  Q
    |||| ||||||||||||||||    ||||| |||| |||| |||||||||||||| | || |||||||||||        ||||||||||||||| ||||    
T  32080408 cacataaaatagaacacacatattaatagtatttatattatgatatttaatttttaagtacctgataatgataaaa----ataatagtaattatt-tttt 32080314  T
Q  193 ttattcatgcatatcatttcttataattttagcttacgtttgttgcgataagattg 248  Q
    ||||||| ||||| || ||   |||||||| ||||||||| |||| ||||||||||    
T  32080313 ttattcaagcataccactttccataatttttgcttacgttggttgtgataagattg 32080258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 147
Target Start/End: Original strand, 20101667 - 20101768
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgt--gggtgtcacacaaaatagaac--acacatta-tagtgtttaaattaagatatttaatt 145  Q
    |||||||| ||||||||| |||||| ||||||||||||||  ||||  |||| ||||||||||  |||||||| |||| |||||||||   |||||||||    
T  20101667 actttgatctaatgttgtgtgaattgaaaaaatagagtgtcggggttccacataaaatagaacatacacattagtagtatttaaattactgtatttaatt 20101766  T
Q  146 tt 147  Q
    ||    
T  20101767 tt 20101768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 303
Target Start/End: Original strand, 19577744 - 19577873
Alignment:
Q  173 ataatagtaattattattttttattcatgcatatcatttcttataattttagcttacgtttgttgcgataagattgggtatccaacggagcatcctatat 272  Q
    |||||| |||||||||||||||||||||  |||||| |||  |||||||||| | |||||  ||  |||||||||| | ||||||  |||  | ||||||    
T  19577744 ataatactaattattattttttattcataaatatcacttcgcataattttagttcacgttgattttgataagattgagaatccaa-tgagttttctatat 19577842  T
Q  273 ttcatccatcgatattcaattagtttgtttc 303  Q
    ||| | |||  |||| |||||||||||||||    
T  19577843 ttccttcattcatatccaattagtttgtttc 19577873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 146
Target Start/End: Original strand, 9179743 - 9179845
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaa--aatagagtgtgggtgt--cacacaaaataga--acacacatta-tagtgtttaaattaagatatttaa 143  Q
    |||||||| ||||||||| |||||| ||||  ||||||||||||| ||  |||| ||||||||  |||||||||| |||||||||||||  | |||||||    
T  9179743 actttgatctaatgttgtgtgaattgaaaaaaaatagagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaa 9179842  T
Q  144 ttt 146  Q
    |||    
T  9179843 ttt 9179845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 146
Target Start/End: Original strand, 9184434 - 9184536
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaa--aatagagtgtgggtgt--cacacaaaataga--acacacatta-tagtgtttaaattaagatatttaa 143  Q
    |||||||| ||||||||| |||||| ||||  ||||||||||||| ||  |||| ||||||||  |||||||||| |||||||||||||  | |||||||    
T  9184434 actttgatctaatgttgtgtgaattgaaaaaaaatagagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaa 9184533  T
Q  144 ttt 146  Q
    |||    
T  9184534 ttt 9184536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 25637799 - 25637882
Alignment:
Q  68 tatgaatttaaaaaatagag--tgtgggtgtcacacaaaatagaacacacatta-tagtgtttaaattaagatatttaattttt 148  Q
    |||||||| ||||| |||||  |||||||  |||| |||||||||||||||||| ||||||||||| |  | ||||||||||||    
T  25637799 tatgaattgaaaaattagagattgtgggtcccacataaaatagaacacacattagtagtgtttaaactgcggtatttaattttt 25637882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 173 - 258
Target Start/End: Complemental strand, 12260932 - 12260847
Alignment:
Q  173 ataatagtaattattattttttattcatgcatatcatttcttataattttagcttacgtttgttgcgataagattgggtatccaac 258  Q
    ||||||||||||||||||||||||||||| |||||| |||| |||||||||||||| ||| |||| |||||||||| | |||||||    
T  12260932 ataatagtaattattattttttattcatggatatcacttctcataattttagcttatgttggttgtgataagattgagaatccaac 12260847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 51 - 258
Target Start/End: Complemental strand, 16036685 - 16036477
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtg--ggtgtcacacaaaataga--acacacatta-tagtgtttaaattaagatatttaatt 145  Q
    |||||||| || |||||| |||||| |||||||||||||||  |||  |||| ||||||||  |||||||||| ||||||||||||   | ||||||| |    
T  16036685 actttgatctagtgttgtgtgaattgaaaaaatagagtgtggaggtcccacataaaatagaacacacacattagtagtgtttaaatagtggtatttaaat 16036586  T
Q  146 tttgatatctgataatgatnnnnnnngataatagtaattattattttttattcatgcatatcatttcttataattttagcttacgtttgttgcgataaga 245  Q
    ||  ||| |||||||||||        |||||| | ||||||||| |||||||||| |||||| ||   |||||||||| ||| |||||||| |||||||    
T  16036585 ttaaatacctgataatgatgaaa----ataataattattattattctttattcatgaatatcactttccataattttaggttatgtttgttgtgataaga 16036490  T
Q  246 ttgggtatccaac 258  Q
    ||| | |||||||    
T  16036489 ttgagaatccaac 16036477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 51 - 164
Target Start/End: Original strand, 23191856 - 23191972
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgtcacacaaaatagaacacaca--tta-tagtgtttaaattaagatatttaatttt 147  Q
    |||||||| || |||||| |||||| ||||||||||||||||| |||||| |||||||||||||||  ||| |||||||||| |   | |||||||||||    
T  23191856 actttgatctagtgttgtgtgaattgaaaaaatagagtgtgggggtcacataaaatagaacacacacattagtagtgtttaagtagtggtatttaatttt 23191955  T
Q  148 tgatatctgataatgat 164  Q
      ||| |||||||||||    
T  23191956 aaatacctgataatgat 23191972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 164
Target Start/End: Complemental strand, 10136404 - 10136286
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaataga--acacacatta-tagtgtttaaattaagatatttaatt 145  Q
    |||||||| ||||||||| |||||| ||||||||||||||||| ||  |||| ||||||||  |||||||||| |||||||||||||  | |||||||||    
T  10136404 actttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaatt 10136305  T
Q  146 tttgatatctgataatgat 164  Q
    ||  |||  ||||||||||    
T  10136304 ttaaatacttgataatgat 10136286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 72 - 248
Target Start/End: Original strand, 39586119 - 39586293
Alignment:
Q  72 aatttaaaaaatagagtgtgggtgtcacaca--aaatagaacacacattatagtgtttaaattaagatatttaatttttgatatctgataatgatnnnnn 169  Q
    |||| ||||||||||||||||  ||| ||||  |||||||||| ||||||   |||||||||   |||||||||||||  ||| |||||||||||         
T  39586119 aattgaaaaaatagagtgtggaggtcccacataaaatagaacaaacattaatatgtttaaatagtgatatttaattttaaatacctgataatgataaaa- 39586217  T
Q  170 nngataatagtaattattattttttattcatgcatatcatttcttataattttagcttacgtttgttgcgataagattg 248  Q
       |||||| ||||||||||| |||||||||| |||||| |||  | |||||||  ||| |||||||| ||||||||||    
T  39586218 ---ataataataattattattctttattcatgaatatcacttcccacaattttaagttatgtttgttgtgataagattg 39586293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 51 - 164
Target Start/End: Original strand, 51040538 - 51040656
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgtcacaca--aaatagaacacaca--tta-tagtgtttaaattaagatatttaatt 145  Q
    |||||||| ||||||||| |||||| |||||||| |||||||| ||| ||||  ||||||||||||||  ||| |||||||||||||  | |||||||||    
T  51040538 actttgatctaatgttgtgtgaattgaaaaaataaagtgtgggagtcccacatgaaatagaacacacacattagtagtgtttaaattgtgttatttaatt 51040637  T
Q  146 tttgatatctgataatgat 164  Q
    ||  |||  ||||||||||    
T  51040638 ttaaatacttgataatgat 51040656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 147
Target Start/End: Complemental strand, 25844835 - 25844734
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaataga--acacacatta-tagtgtttaaattaagatatttaatt 145  Q
    |||||||| ||||||||| |||||| ||||||||||||||||| ||  | || ||||||||  |||||||||| |||||||||||||  | |||||||||    
T  25844835 actttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccgcataaaatagaacacacacattagtagtgtttaaattgtggtatttaatt 25844736  T
Q  146 tt 147  Q
    ||    
T  25844735 tt 25844734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 38622290 - 38622200
Alignment:
Q  30 agattaaaaa-caagtaatgggactttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaatagaacacacat 117  Q
    |||||||||| ||||||||   |||||||| ||||||||| |||||| ||||||||||||||||| ||  |||| |||||||||| |||||    
T  38622290 agattaaaaatcaagtaattatactttgatctaatgttgtgtgaattgaaaaaatagagtgtgggagtcccacataaaatagaactcacat 38622200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 248
Target Start/End: Complemental strand, 46697291 - 46697217
Alignment:
Q  173 ataatagtaattattattttttattcatgcatatcatttcttataattttagcttacgtttgttgcgataagattg 248  Q
    ||||||||||||||||||||||| ||||| |||||| |||  || ||||||| ||| |||||||| ||||||||||    
T  46697291 ataatagtaattattattttttactcatgaatatcacttcccattattttag-ttatgtttgttgtgataagattg 46697217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 46697393 - 46697329
Alignment:
Q  50 gactttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgtcacacaaaatagaacaca 114  Q
    |||||||||||| |||||| |||||| |||||||||||| |||||  |||| |||||| ||||||    
T  46697393 gactttgatttagtgttgtgtgaattgaaaaaatagagtatgggtcccacataaaatataacaca 46697329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 164
Target Start/End: Original strand, 16648646 - 16648765
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgt---gggtgtcacacaaaataga--acacacatta-tagtgtttaaattaagatatttaat 144  Q
    |||||||| ||||||||| | |||| ||||||||||||||   ||||  |||| ||||||||  |||||||||| |||||||||||||  | ||||||||    
T  16648646 actttgatctaatgttgtgtaaattgaaaaaatagagtgtagggggtcccacataaaatagaacacacacattagtagtgtttaaattgcggtatttaat 16648745  T
Q  145 ttttgatatctgataatgat 164  Q
    |||  |||  ||||||||||    
T  16648746 tttaaatacttgataatgat 16648765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 110 - 248
Target Start/End: Complemental strand, 29351243 - 29351108
Alignment:
Q  110 acacacattat-agtgtttaaattaagatatttaatttttgatatctgataatgatnnnnnnngataatagtaattattattttttattcatgcatatca 208  Q
    ||||||||||| |||||||||||   | |||||||||||  |||||||||||||||        |||||| ||||||||||| |||||||||| ||||||    
T  29351243 acacacattattagtgtttaaatagtggtatttaattttaaatatctgataatgatgaaa----ataataataattattattctttattcatggatatca 29351148  T
Q  209 tttcttataattttagcttacgtttgttgcgataagattg 248  Q
     |||| |||||||||| ||| |||||||| ||||||||||    
T  29351147 cttctcataattttagattatgtttgttgtgataagattg 29351108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 51 - 248
Target Start/End: Original strand, 3656274 - 3656475
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgt--gggtgtcacacaaaatagaacac--acatta-tagtgtttaaattaagatatttaatt 145  Q
    ||||||||||| |||||| |||||| |||||||||| |||  ||||  |||| ||||||||||||  |||||| ||||||||||||   | |||||||||    
T  3656274 actttgatttagtgttgtgtgaattgaaaaaatagaatgtaggggtcccacataaaatagaacacggacattagtagtgtttaaatagtggtatttaatt 3656373  T
Q  146 tttgatatctgataatgatnnnnnnngataatagtaattattattttttattcatgcatatcatttcttataattttagcttacgtttgttgcgataaga 245  Q
    ||  ||| |||||||||||        |||||  | ||||||||| |||||||||| |||||| |||| |||||||||  ||| |||||||| |||||||    
T  3656374 ttaaatacctgataatgatgaaaata-ataattattattattattctttattcatggatatcacttctcataattttatgttatgtttgttgtgataaga 3656472  T
Q  246 ttg 248  Q
    |||    
T  3656473 ttg 3656475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 53 - 164
Target Start/End: Complemental strand, 55432302 - 55432188
Alignment:
Q  53 tttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgtc--acacaaaatagaacacacatta-tagtgtttaaattaagatatttaatttttg 149  Q
    |||||| ||||| ||| |||||| |||||||| |||||||| |||  |||||||||||||||||||||| |||||||||||||    |||||||||||      
T  55432302 tttgatctaatgctgtgtgaattgaaaaaataaagtgtgggggtcccacacaaaatagaacacacattagtagtgtttaaattgcagtatttaattttaa 55432203  T
Q  150 atatctgataatgat 164  Q
    |||| ||||||||||    
T  55432202 atatttgataatgat 55432188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 164
Target Start/End: Complemental strand, 18473085 - 18472967
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaataga--acacacatta-tagtgtttaaattaagatatttaatt 145  Q
    |||||||| ||||||||| |||||| ||||||||||||||||| ||  |||| ||||||||  |||||||||| |||||||||||||  | |||||||||    
T  18473085 actttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaatt 18472986  T
Q  146 tttgatatctgataatgat 164  Q
    ||  |||  ||||||||||    
T  18472985 ttaaatacttgataatgat 18472967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 51 - 146
Target Start/End: Original strand, 757381 - 757481
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgt--gggtgtcacacaaaataga--acacacatta-tagtgtttaaattaagatatttaatt 145  Q
    |||||||| ||||||||| |||||| ||||||||||||||  |||| ||||| ||||||||  |||||||||| |||||||||||||  | |||||||||    
T  757381 actttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtctcacataaaatagaacacacacattagtagtgtttaaattgtggtatttaatt 757480  T
Q  146 t 146  Q
    |    
T  757481 t 757481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 41 - 227
Target Start/End: Complemental strand, 7860797 - 7860608
Alignment:
Q  41 aagtaatgggactttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgtcacaca--aaatagaacacaca---ttatagtgtttaaattaag 135  Q
    |||||||  ||||||||| || | ||| | ||||| ||||||||||||||||  ||| ||||  ||||||||||||||   | ||||||||||||||| |    
T  7860797 aagtaattagactttgatctagttttggacgaattgaaaaaatagagtgtggaggtcccacataaaatagaacacacacattaatagtgtttaaattatg 7860698  T
Q  136 atatttaattttt-gatatctgataatgatnnnnnnngataatagtaattattattttttattcatgcatatcatttcttataattttagctt 227  Q
     ||||||||||||  |||||| ||||||||        | ||||||| |||||||||||||||||| ||||||| ||| ||||| ||| ||||    
T  7860697 gtatttaatttttaaatatcttataatgataaaaa---aaaatagtatttattattttttattcattcatatcacttcctataactttcgctt 7860608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 51 - 164
Target Start/End: Original strand, 7570232 - 7570350
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaatagaacacac--atta-tagtgtttaaattaagatatttaatt 145  Q
    |||||||| ||||||||| |||||| ||||||||||||||||| ||  | || ||||||||||||||  |||| |||||||||||||  | |||||||||    
T  7570232 actttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccgcataaaatagaacacacatattagtagtgtttaaattgtggtatttaatt 7570331  T
Q  146 tttgatatctgataatgat 164  Q
    ||  |||  ||||||||||    
T  7570332 ttaaatacttgataatgat 7570350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 51 - 132
Target Start/End: Complemental strand, 20521040 - 20520954
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaataga--acacacatta-tagtgtttaaatt 132  Q
    |||||||| ||||||||| |||||| ||||||||||||||||| ||  |||| ||||||||  |||||||||| |||||||||||||    
T  20521040 actttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccacataaaatagaatacacacattagtagtgtttaaatt 20520954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 58 - 164
Target Start/End: Complemental strand, 27710000 - 27709892
Alignment:
Q  58 tttaatgttgtatgaatttaaaaaatagagtgt-gggtgtcacacaaaatagaacacacatta-tagtgtttaaattaagatatttaatttttgatatct 155  Q
    ||||||||||| |||||| |||||||||||||| ||||  |||| ||||||||||| || ||| |||||||||||||  | |||||||||||  |||  |    
T  27710000 tttaatgttgtgtgaattgaaaaaatagagtgtggggtcccacataaaatagaacatacgttagtagtgtttaaattgtggtatttaattttaaatactt 27709901  T
Q  156 gataatgat 164  Q
    |||||||||    
T  27709900 gataatgat 27709892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 132
Target Start/End: Complemental strand, 20175469 - 20175386
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgt-gggtgtcacacaaaatagaacacacatta-tagtgtttaaatt 132  Q
    |||||||| ||||||||| | |||| |||||||||||||| ||||  |||| |||||||||||||||||| |||| ||||||||    
T  20175469 actttgatctaatgttgtgttaattgaaaaaatagagtgtggggttccacataaaatagaacacacattagtagtatttaaatt 20175386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 164
Target Start/End: Complemental strand, 46965091 - 46964974
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgt--gggtgtcacacaaaatagaa--cacacattatagtgtttaaattaagatatttaattt 146  Q
    |||||||| ||||||||| |||||| ||||||||||||||  |||   |||| |||||||||  |||||||||||||||||||| |  | ||||||||||    
T  46965091 actttgatctaatgttgtgtgaattgaaaaaatagagtgtgagggccccacataaaatagaactcacacattatagtgtttaaactgcggtatttaattt 46964992  T
Q  147 ttgatatctgataatgat 164  Q
    |  |||  ||||||||||    
T  46964991 taaatacttgataatgat 46964974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 164
Target Start/End: Complemental strand, 55326854 - 55326738
Alignment:
Q  53 tttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgtcacaca--aaatagaacacaca--tta-tagtgtttaaattaagatatttaatttt 147  Q
    |||||| ||||||||| |||||| |||||||| |||||||| ||| ||||  ||||||||||||||  ||| |||||||||||||  | |||||||||||    
T  55326854 tttgatctaatgttgtgtgaattgaaaaaatatagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaatttt 55326755  T
Q  148 tgatatctgataatgat 164  Q
      |||  ||||||||||    
T  55326754 aaatacttgataatgat 55326738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 14437719 - 14437825
Alignment:
Q  63 tgttgtatgaatttaaaaaatagagtgtg--ggtgtcacacaaaataga--acacacatta-tagtgtttaaattaagatatttaatttttgatatctga 157  Q
    |||||| |||||| |||||||||||||||  ||| ||||| ||||||||  |||||||||| |||||||||||||  | |||||||||||  |||  |||    
T  14437719 tgttgtgtgaattgaaaaaatagagtgtggaggtctcacataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttga 14437818  T
Q  158 taatgat 164  Q
    |||||||    
T  14437819 taatgat 14437825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 164
Target Start/End: Complemental strand, 18468289 - 18468173
Alignment:
Q  53 tttgatttaatgttgtatgaatttaaaaaa-tagagtgtgggtgtc-acacaaaatagaacacaca--tta-tagtgtttaaattaagatatttaatttt 147  Q
    |||||| ||||||||| |||||| |||||| ||||||||||| ||| ||| || ||||||||||||  ||| |||||||||||||  | |||||||||||    
T  18468289 tttgatctaatgttgtgtgaattgaaaaaaatagagtgtgggggtctacataatatagaacacacacattagtagtgtttaaattgtggtatttaatttt 18468190  T
Q  148 tgatatctgataatgat 164  Q
      |||  ||||||||||    
T  18468189 aaatacttgataatgat 18468173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 23660506 - 23660547
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgg 92  Q
    |||||||| ||||||||| |||||| ||||||||||||||||    
T  23660506 actttgatctaatgttgtgtgaattgaaaaaatagagtgtgg 23660547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 23665138 - 23665179
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgg 92  Q
    |||||||| ||||||||| |||||| ||||||||||||||||    
T  23665138 actttgatctaatgttgtgtgaattgaaaaaatagagtgtgg 23665179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 147
Target Start/End: Original strand, 12970828 - 12970926
Alignment:
Q  54 ttgatttaatgttgtatgaatttaaaaaatagagtgtg--ggtgtcacacaaaatagaacacaca--tta-tagtgtttaaattaagatatttaatttt 147  Q
    ||||||||||||||| |||||| |||||||| ||||||  | |  |||| |||||||||||||||  ||| |||||||||||||  | |||||||||||    
T  12970828 ttgatttaatgttgtgtgaattgaaaaaataaagtgtggtgatcccacataaaatagaacacacactttagtagtgtttaaattgcggtatttaatttt 12970926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 51 - 147
Target Start/End: Original strand, 20747314 - 20747415
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgtc--acacaaaatagaac--acacatta-tagtgtttaaattaagatatttaatt 145  Q
    |||||||||||||||||| |||||| ||||||||||||||||| |||  ||| ||||||||||  |||||||| |||||||||||||  | |||||||||    
T  20747314 actttgatttaatgttgtgtgaattgaaaaaatagagtgtgggggtcctacataaaatagaacttacacattagtagtgtttaaattgcggtatttaatt 20747413  T
Q  146 tt 147  Q
    ||    
T  20747414 tt 20747415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 245
Target Start/End: Original strand, 25313490 - 25313686
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgtcacac--aaaatagaacac--acatta-tagtgtttaaattaagatatttaatt 145  Q
    |||||||| ||||||| |||||||| ||||||||||||||| | |||||||  ||||||||||||  | |||| |||||||||||||  | |||||||||    
T  25313490 actttgatataatgttttatgaattgaaaaaatagagtgtgcgggtcacacataaaatagaacacatatattagtagtgtttaaattgcggtatttaatt 25313589  T
Q  146 tttgatatctgataatgatnnnnnnngataatagtaattattattttttattcatgcatatcatttcttataattttagcttacgtttgttgcgataaga 245  Q
    ||  |||  ||||||||||        |||||||||||||||| |||||||||  | |||||| ||| ||||| ||||||||| | | |||| |||||||    
T  25313590 ttaaatacttgataatgataaaaaa--ataatagtaattatta-tttttattcgagaatatcacttcctataaatttagcttatgatagttgtgataaga 25313686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 245
Target Start/End: Original strand, 26200984 - 26201180
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgtcacac--aaaatagaacac--acatta-tagtgtttaaattaagatatttaatt 145  Q
    |||||||| ||||||| |||||||| ||||||||||||||| | |||||||  ||||||||||||  | |||| |||||||||||||  | |||||||||    
T  26200984 actttgatataatgttttatgaattgaaaaaatagagtgtgcgggtcacacataaaatagaacacatatattagtagtgtttaaattgcggtatttaatt 26201083  T
Q  146 tttgatatctgataatgatnnnnnnngataatagtaattattattttttattcatgcatatcatttcttataattttagcttacgtttgttgcgataaga 245  Q
    ||  |||  ||||||||||        |||||||||||||||| |||||||||  | |||||| ||| ||||| ||||||||| | | |||| |||||||    
T  26201084 ttaaatacttgataatgataaaaaa--ataatagtaattatta-tttttattcgagaatatcacttcctataaatttagcttatgatagttgtgataaga 26201180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 51 - 258
Target Start/End: Complemental strand, 12690047 - 12689843
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgg-gtgtcacacaaaataga--acacacatta-tagtgtttaaattaagatatttaattt 146  Q
    |||||||| || |||||| |||||| |||||||||||||||| ||  |||| ||||||||  |||||||||| ||||||||||||   | ||||||||||    
T  12690047 actttgatctagtgttgtgtgaattgaaaaaatagagtgtggagtcccacataaaatagaacacacacattagtagtgtttaaatagcggtatttaattt 12689948  T
Q  147 ttgatatctgataatgatnnnnnnngataatagtaattattattttttattcatgcatatcatttcttataattttagcttacgtttgttgcgataagat 246  Q
    |  ||| |||||| ||||       || |||| |||| |||||| |||||| ||| |||||| |||  |||||||||| ||| |||||||| |||| |||    
T  12689947 taaataactgatattgat-------gaaaataataataattattctttatttatggatatcacttcccataattttaggttatgtttgttgtgatatgat 12689855  T
Q  247 tgggtatccaac 258  Q
    || | |||||||    
T  12689854 tgagaatccaac 12689843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 51 - 164
Target Start/End: Complemental strand, 17600456 - 17600341
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgt--gggtgtcacacaaaatagaacacacattatagtgtttaaattaagatatttaattttt 148  Q
    |||||||| ||||||||| |||||| ||||||||||||||  ||||  |||| ||||||||||||| |   |||||||||||||  | |||||||||||     
T  17600456 actttgatctaatgttgtgtgaattgaaaaaatagagtgtgagggtcccacataaaatagaacacaaacattagtgtttaaattgtggtatttaatttta 17600357  T
Q  149 gatatctgataatgat 164  Q
     |||  ||||||||||    
T  17600356 aataattgataatgat 17600341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 51 - 164
Target Start/End: Original strand, 17963575 - 17963693
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaataga--acacacatta-tagtgtttaaattaagatatttaatt 145  Q
    |||||||| ||||| ||| |||||| ||||||||||||||||| ||  |||| ||||||||  |||||||||| |||||||||||||  | |||||||||    
T  17963575 actttgatctaatgatgtgtgaattgaaaaaatagagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaatt 17963674  T
Q  146 tttgatatctgataatgat 164  Q
    ||  |||  ||||||||||    
T  17963675 ttaaatacttgataatgat 17963693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 11569709 - 11569775
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgt-gggtgtcacacaaaatagaacacaca 116  Q
    |||||||| ||||||||| |||||| |||||||||||||| ||||  |||| |||||||||||||||    
T  11569709 actttgatctaatgttgtgtgaattgaaaaaatagagtgtggggtcccacataaaatagaacacaca 11569775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 164
Target Start/End: Original strand, 16835178 - 16835297
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaa-aatagagtgtgggtgt--cacacaaaataga--acacacatta-tagtgtttaaattaagatatttaat 144  Q
    |||||||| ||||||||| |||||| |||| ||||||||||||| ||  |||| ||||||||  |||||||||| |||||||||||||  | ||||||||    
T  16835178 actttgatctaatgttgtgtgaattaaaaaaaatagagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtggtatttaat 16835277  T
Q  145 ttttgatatctgataatgat 164  Q
    |||  |||  ||||||||||    
T  16835278 tttaaatacttgataatgat 16835297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 164
Target Start/End: Original strand, 6406877 - 6406995
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgtc--acacaaaataga--acacacatta-tagtgtttaaattaagatatttaatt 145  Q
    |||||||| || |||||| |||||| ||||||||||||||||| |||   || ||||||||  |||||||||| |||||||||||||  | |||||||||    
T  6406877 actttgatctattgttgtgtgaattgaaaaaatagagtgtgggggtcctgcataaaatagaacacacacattagtagtgtttaaattgtggtatttaatt 6406976  T
Q  146 tttgatatctgataatgat 164  Q
    ||  |||  ||||||||||    
T  6406977 ttaaatacttgataatgat 6406995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 164
Target Start/End: Original strand, 11533721 - 11533836
Alignment:
Q  53 tttgatttaatgttgtatgaatttaaaaaatagagtgtggg-tgtcacacaaaatagaacacaca---ttatagtgtttaaattaagatatttaattttt 148  Q
    |||||| ||||||||| |||||| |||||||| |||||||| |  |||| |||||||||||||||   |  |||||||||||||  | |||||||||||     
T  11533721 tttgatctaatgttgtgtgaattgaaaaaataaagtgtggggtcccacataaaatagaacacacacattggtagtgtttaaattgcggtatttaatttta 11533820  T
Q  149 gatatctgataatgat 164  Q
     |||  ||||||||||    
T  11533821 aatacttgataatgat 11533836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 164
Target Start/End: Original strand, 11559231 - 11559346
Alignment:
Q  53 tttgatttaatgttgtatgaatttaaaaaatagagtgtggg-tgtcacacaaaatagaacacaca---ttatagtgtttaaattaagatatttaattttt 148  Q
    |||||| ||||||||| |||||| |||||||| |||||||| |  |||| |||||||||||||||   |  |||||||||||||  | |||||||||||     
T  11559231 tttgatctaatgttgtgtgaattgaaaaaatacagtgtggggtcccacataaaatagaacacacacattggtagtgtttaaattgcggtatttaatttta 11559330  T
Q  149 gatatctgataatgat 164  Q
     |||  ||||||||||    
T  11559331 aatacttgataatgat 11559346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 11429036 - 11428969
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgtcacaca--aaatagaacacaca 116  Q
    |||||||| ||||||||  |||||| ||||||||||||||||| ||| ||||  ||||||| ||||||    
T  11429036 actttgatctaatgttgcgtgaattgaaaaaatagagtgtgggggtcccacattaaatagagcacaca 11428969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 12799113 - 12799161
Alignment:
Q  180 taattattattttttattcatgcatatcatttcttataattttagctta 228  Q
    |||||||||||||||| ||||| |||||| |||  ||||||||||||||    
T  12799113 taattattattttttactcatggatatcacttcccataattttagctta 12799161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 245
Target Start/End: Complemental strand, 12257100 - 12256907
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgt-gggtgtcacacaaaatagaacaca--catta-tagtgtttaaattaagatatttaattt 146  Q
    |||||||||||||||||| | |||| |||||||||||||| ||||  |||| |||||||||||||  ||||| |||||||||||||  | ||||||||||    
T  12257100 actttgatttaatgttgtgtaaattgaaaaaatagagtgtggggtcccacataaaatagaacacacgcattagtagtgtttaaattgtggtatttaattt 12257001  T
Q  147 ttgatatctgataatgatnnnnnnngataatagtaattattattttttattcatgcatatcatttcttataattttagcttacgtttgttgcgataaga 245  Q
    |  |||  ||||||||||        |||||||||||||||| ||||||||| || |||||| |||  |||| ||||||||| | | |||| |||||||    
T  12257000 taaatacttgataatgataaaa----ataatagtaattatta-tttttattcgtgaatatcacttcccataaatttagcttatggtggttgtgataaga 12256907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 9815016 - 9815087
Alignment:
Q  173 ataatagtaattattattttttattcatgcatatcatttcttataattttagcttacgtttgttgcgataaga 245  Q
    |||||||||||||||||||| |||||||  |||||| |||| |||| ||||||||||||| |||| |||||||    
T  9815016 ataatagtaattattatttt-tattcatcaatatcacttctcataaatttagcttacgttggttgtgataaga 9815087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 10716941 - 10717012
Alignment:
Q  173 ataatagtaattattattttttattcatgcatatcatttcttataattttagcttacgtttgttgcgataaga 245  Q
    |||||||||||||||||||| |||||||  |||||| |||| |||| ||||||||||||| |||| |||||||    
T  10716941 ataatagtaattattatttt-tattcatcaatatcacttctcataaatttagcttacgttggttgtgataaga 10717012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 147
Target Start/End: Complemental strand, 4931302 - 4931201
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaataga--acacacatta-tagtgtttaaattaagatatttaatt 145  Q
    |||||||| ||||||||| |||||| ||||||||||||||||| ||  | || ||||||||  |||||||||| |||||||||||||  | |||||||||    
T  4931302 actttgatataatgttgtgtgaattgaaaaaatagagtgtgggggtcccgcataaaatagaacacacacattagtagtgtttaaattgtggtatttaatt 4931203  T
Q  146 tt 147  Q
    ||    
T  4931202 tt 4931201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 246
Target Start/End: Original strand, 13313331 - 13313528
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaataga--acacacatta-tagtgtttaaattaagatatttaatt 145  Q
    ||||||||||| | |||| |||||| |||||||||||||||| |||  |||| ||||||||  |||||||||| ||||||||||||   | |||||||||    
T  13313331 actttgatttagtattgtgtgaattgaaaaaatagagtgtggatgtcccacataaaatagaacacacacattagtagtgtttaaatagtggtatttaatt 13313430  T
Q  146 tttgatatctgataatgatnnnnnnngataatagtaatta-ttattttttattcatgcatatcatttcttataattttagcttacgtttgttgcgataag 244  Q
    ||  |||  ||||||||||        ||||||  ||||| || ||||||||||||| |||||| |||  |||||||||| ||| ||| |||| ||||||    
T  13313431 ttaaatacttgataatgatgaaa----ataataacaattattttttttttattcatggatatcacttcacataattttagtttatgttggttgtgataag 13313526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 164
Target Start/End: Complemental strand, 26342284 - 26342168
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgtcacacaaaatagaaca--cacatta-tagtgtttaaattaagatatttaatttt 147  Q
    ||||| ||||||| || | |||||| ||||||||| ||| ||||  |||| |||||||||||  ||||||| |||||||||||||  |||||||||||||    
T  26342284 actttaatttaatattatgtgaattgaaaaaatagtgtgggggtcccacataaaatagaacacacacattagtagtgtttaaattgtgatatttaatttt 26342185  T
Q  148 tgatatctgataatgat 164  Q
      |||  ||||||||||    
T  26342184 aaatacttgataatgat 26342168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 2595849 - 2595782
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaatagaacacaca 116  Q
    ||||| || ||||||||| |||||| |||||||||||||||||| |  |||| |||||||||||||||    
T  2595849 actttaatctaatgttgtgtgaattgaaaaaatagagtgtgggtatcccacataaaatagaacacaca 2595782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 132
Target Start/End: Original strand, 42625595 - 42625681
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaatagaa--cacacatta-tagtgtttaaatt 132  Q
    |||||||| ||||||| | |||||| ||||||||||||||||| ||  |||| |||||||||  ||||||||| |||||||||||||    
T  42625595 actttgatctaatgttatgtgaattgaaaaaatagagtgtgggggtcccacataaaatagaactcacacattagtagtgtttaaatt 42625681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 24777706 - 24777753
Alignment:
Q  85 gagtgtgggtgtcacacaaaatagaacacacattatagtgtttaaatt 132  Q
    |||||||||| ||||| ||||||||||||||||  |||||||||||||    
T  24777706 gagtgtgggtatcacataaaatagaacacacatggtagtgtttaaatt 24777753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 245
Target Start/End: Complemental strand, 3881050 - 3880853
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgt--gggtgtcacacaaaatagaacaca-----catta-tagtgtttaaattaagatattta 142  Q
    |||||||| |||| |||  |||||| ||||||||||||||  |||| ||||| |||||||||||||     ||||| ||||| |||||||  ||||||||    
T  3881050 actttgatctaatattgcgtgaattgaaaaaatagagtgtgggggtctcacataaaatagaacacacacatcattagtagtgcttaaattgtgatattta 3880951  T
Q  143 atttttgatatctgataatgatnnnnnnngataatagtaattattattttttattcatgcatatcatttcttataattttagcttacgtttgttgcgata 242  Q
    |||||  |||  ||||||||||        |||||||||||||||| ||||||||  || |||||| |||  |||| ||||||||| | |||||| ||||    
T  3880950 attttaaatacttgataatgataaaa----ataatagtaattatta-tttttatttgtgaatatcacttcccataaatttagcttatgattgttgtgata 3880856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 4580544 - 4580477
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgt--gggtgtcacacaaaatagaacacaca 116  Q
    ||||||||||| |||||| |||||| ||||||||||||||  ||||  || | |||||||||||||||    
T  4580544 actttgatttagtgttgtgtgaattaaaaaaatagagtgtaggggtcccatataaaatagaacacaca 4580477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 51 - 164
Target Start/End: Original strand, 15950589 - 15950707
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtg--ggtgtcacacaaaatagaacacaca---ttatagtgtttaaattaagatatttaatt 145  Q
    |||||||| ||||||||| |||||| |||||||||||||||  |||| |||| |||||||||||||||   | ||||||||||||||  | |||||||||    
T  15950589 actttgatctaatgttgtgtgaattgaaaaaatagagtgtggaggtgccacataaaatagaacacacacattaatagtgtttaaattgcggtatttaatt 15950688  T
Q  146 tttgatatctgataatgat 164  Q
    ||  |||  ||||||||||    
T  15950689 ttaaatacttgataatgat 15950707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 147
Target Start/End: Original strand, 40124911 - 40125012
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaataga--acacacatta-tagtgtttaaattaagatatttaatt 145  Q
    |||||||| ||||||||| |||||| ||||||||||||||||| ||  | || ||||||||  |||||||||| |||||||||||||  | |||||||||    
T  40124911 actttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccgcataaaatagaacacacacattagtagtgtttaaattgtggtatttaatt 40125010  T
Q  146 tt 147  Q
    ||    
T  40125011 tt 40125012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 17021334 - 17021268
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgt-gggtgtcacacaaaatagaacacaca 116  Q
    |||||||| ||||||||| |||||| |||||||||||||| ||||  |||| |||||||||||||||    
T  17021334 actttgatctaatgttgtgtgaattgaaaaaatagagtgtggggtcccacataaaatagaacacaca 17021268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 17551771 - 17551705
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgt-gggtgtcacacaaaatagaacacaca 116  Q
    |||||||| ||||||||| |||||| |||||||||||||| ||||  |||| |||||||||||||||    
T  17551771 actttgatctaatgttgtgtgaattgaaaaaatagagtgtggggtcccacataaaatagaacacaca 17551705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 164
Target Start/End: Original strand, 28564314 - 28564430
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgtcacacaaaatagaacacaca--tta-tagtgtttaaattaagatatttaatttt 147  Q
    |||||||| ||||||||| |  ||| ||||||||| |||  |||  |||| |||||||||||||||  ||| |||||||||||||| | |||||||||||    
T  28564314 actttgatctaatgttgtgtacattgaaaaaatagtgtggaggttccacataaaatagaacacacacattagtagtgtttaaattacggtatttaatttt 28564413  T
Q  148 tgatatctgataatgat 164  Q
      |||| ||||||||||    
T  28564414 aaatatttgataatgat 28564430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 164
Target Start/End: Original strand, 38181299 - 38181417
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgtcacaca--aaatagaacacaca--tta-tagtgtttaaattaagatatttaatt 145  Q
    |||||||| ||||||||| |||||| |||||||| |||||| | ||| ||||  ||||||||||||||  ||| |||||||||||||  | |||||||||    
T  38181299 actttgatctaatgttgtgtgaattgaaaaaataaagtgtgagagtcccacataaaatagaacacacacattagtagtgtttaaattgcggtatttaatt 38181398  T
Q  146 tttgatatctgataatgat 164  Q
    ||  |||  ||||||||||    
T  38181399 ttaaatacttgataatgat 38181417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 102
Target Start/End: Original strand, 1909964 - 1910015
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgtcacaca 102  Q
    |||||||| ||||||||| |||||| |||||||||||||||| |||| ||||    
T  1909964 actttgatctaatgttgtgtgaattgaaaaaatagagtgtggatgtcccaca 1910015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 164
Target Start/End: Complemental strand, 1808529 - 1808412
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtggg-tgtcacacaaaatagaacacaca--ttata-gtgtttaaattaagatatttaattt 146  Q
    |||||||| ||||||||| |||||| |||||||| |||||||| |  || | |||||||||||||||  ||| | |||||||||||  | ||||||||||    
T  1808529 actttgatctaatgttgtgtgaattgaaaaaatatagtgtggggtcccatataaaatagaacacacacattagaagtgtttaaattgcggtatttaattt 1808430  T
Q  147 ttgatatctgataatgat 164  Q
    |  |||| ||||||||||    
T  1808429 taaatatttgataatgat 1808412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 147
Target Start/End: Complemental strand, 7002735 - 7002623
Alignment:
Q  40 caagtaatgggactttgatttaatgttgtatgaatttaaaaaatagagtgtggg--tgtcacacaaaataga--acacacatta-tagtgtttaaattaa 134  Q
    ||||||||  ||||||||| || | |||| |||||| |||||||||||||||||  | ||||| ||||||||  ||| |||||| |||||||||||||      
T  7002735 caagtaattagactttgatctagtattgtgtgaattgaaaaaatagagtgtggggatctcacataaaatagaatacatacattagtagtgtttaaattgt 7002636  T
Q  135 gatatttaatttt 147  Q
    | |||||||||||    
T  7002635 ggtatttaatttt 7002623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 17953164 - 17953230
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgt-gggtgtcacacaaaatagaacacaca 116  Q
    |||||||| || |||||| |||||| |||||||||||||| ||||  |||| |||||||||||||||    
T  17953164 actttgatctagtgttgtgtgaattgaaaaaatagagtgtggggtaccacaaaaaatagaacacaca 17953230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 26780176 - 26780065
Alignment:
Q  57 atttaatgttgtatgaatttaaaaaatagagtgtgggtgtcacaca--aaatagaacacaca--tta-tagtgtttaaattaagatatttaatttttgat 151  Q
    |||||||||||| |||||| ||||  ||||||||||||||| ||||  ||||||||||||||  ||| |||||||||||||  | |||||||||||  ||    
T  26780176 atttaatgttgtgtgaattgaaaac-tagagtgtgggtgtcccacataaaatagaacacacacattagtagtgtttaaattgcggtatttaattttaaat 26780078  T
Q  152 atctgataatgat 164  Q
    |  ||||||||||    
T  26780077 acttgataatgat 26780065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 28864248 - 28864202
Alignment:
Q  177 tagtaattattattttttattcatgcatatcatttcttataatttta 223  Q
    ||||||||||||||||||||||||  ||||||  |||||||||||||    
T  28864248 tagtaattattattttttattcatatatatcacgtcttataatttta 28864202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 164
Target Start/End: Complemental strand, 33417595 - 33417491
Alignment:
Q  65 ttgtatgaatttaaaaaatagagtgt--gggtgtcacacaaaatagaaca--cacatta-tagtgtttaaattaagatatttaatttttgatatctgata 159  Q
    |||| |||||| ||||||||||||||  |||| ||||| |||||||||||  ||||||| |||||||||||||  | |||||||||||  |||  |||||    
T  33417595 ttgtgtgaattgaaaaaatagagtgtatgggtctcacataaaatagaacacacacattagtagtgtttaaattgtggtatttaattttaaatacttgata 33417496  T
Q  160 atgat 164  Q
    |||||    
T  33417495 atgat 33417491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 17798012 - 17797971
Alignment:
Q  173 ataatagtaattattattttttattcatgcatatcatttctt 214  Q
    |||||||||||||||| ||||||||| ||||||||| |||||    
T  17798012 ataatagtaattattaatttttattcgtgcatatcacttctt 17797971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 164
Target Start/End: Complemental strand, 8188 - 8070
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaataga--acacacatta-tagtgtttaaattaagatatttaatt 145  Q
    |||||||||||||||||| |||||| ||||||||||||||||| ||  |||| || |||||  |||||||||| |||||||||||||  | |||||||||    
T  8188 actttgatttaatgttgtgtgaattgaaaaaatagagtgtgggggtcccacataagatagaacacacacattagtagtgtttaaattgtggtatttaatt 8089  T
Q  146 tttgatatctgataatgat 164  Q
    ||  |||  ||||||||||    
T  8088 ttaaatacttgataatgat 8070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 147
Target Start/End: Complemental strand, 5143 - 5042
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtgggtgt--cacacaaaatagaaca--cacatta-tagtgtttaaattaagatatttaatt 145  Q
    |||||||| ||||||||| |||||| ||||||||||||||||| ||  | || |||||||||||  ||||||| |||||||||||||  | |||||||||    
T  5143 actttgatctaatgttgtgtgaattgaaaaaatagagtgtgggggtcccgcataaaatagaacactcacattagtagtgtttaaattgtggtatttaatt 5044  T
Q  146 tt 147  Q
    ||    
T  5043 tt 5042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 164
Target Start/End: Original strand, 442957 - 443074
Alignment:
Q  51 actttgatttaatgttgtatgaatttaaaaaatagagtgtggg-tgtcacacaaaatagaacacacattatagt---gtttaaattaagatatttaattt 146  Q
    |||||||| ||||||||| |||||| ||||||||||||||||| |  |||| |||||||||||||||   ||||   |||||||||  | ||||||||||    
T  442957 actttgatctaatgttgtgtgaattgaaaaaatagagtgtggggtcccacataaaatagaacacacacattagttgggtttaaattgtggtatttaattt 443056  T
Q  147 ttgatatctgataatgat 164  Q
    |  |||| ||||||||||    
T  443057 taaatatttgataatgat 443074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 116
Target Start/End: Original strand, 64890 - 64978
Alignment:
Q  30 agattaaaaacaagtaatgggactttgatttaatgttgtatgaatttaaaaaatagagtgt--gggtgtcacacaaaatagaacacaca 116  Q
    |||||||| |||||||||   |||||||| || |||||| |||||| ||||||||||||||  ||||  |||| |||||||||||||||    
T  64890 agattaaacacaagtaattaaactttgatctagtgttgtgtgaattaaaaaaatagagtgtaggggtcccacataaaatagaacacaca 64978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 36198 - 36158
Alignment:
Q  53 tttgatttaatgttgtatgaatttaaaaaatagagtgtggg 93  Q
    |||||| |||||||||||||||| |||||||||||||||||    
T  36198 tttgatctaatgttgtatgaattgaaaaaatagagtgtggg 36158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 147
Target Start/End: Complemental strand, 30254 - 30155
Alignment:
Q  53 tttgatttaatgttgtatgaatttaaaaaatagagtgt--gggtgtcacacaaaataga--acacacatta-tagtgtttaaattaagatatttaatttt 147  Q
    |||||| ||||||||| |||||| ||||||||||||||  || |  |||| ||||||||  |||||||||| |||||||||||||  | |||||||||||    
T  30254 tttgatctaatgttgtgtgaattgaaaaaatagagtgtagggatcccacataaaatagaacacacacattagtagtgtttaaattgcggtatttaatttt 30155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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