View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14063_low_15 (Length: 215)
Name: NF14063_low_15
Description: NF14063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14063_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 34007622 - 34007831
Alignment:
| Q |
1 |
acacgaacttgaatccctctccaccaccttgtgtttgatttgccaccatctaagcctgcttcacatcacatttcatgaagctttcccaagttggaaacat |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34007622 |
acacgaacttgaatccctctccaacaccttgtgtgtgatttgccaccatcttagccttcttcacatcacatttcatgaagctttgccaagttggaaacat |
34007721 |
T |
|
| Q |
101 |
gtatacgctgtgtgggaaacttgttgcatttggagcatcatacttgaaaactacacatgcataaatatcaaatatcaacattatataagattcatgccgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34007722 |
gtatacgctgtgtgggaaacttgttgcatttggagcatcatacttgaaaactacacatgcataaatatcaaatatcaacattatataagattcatgccgt |
34007821 |
T |
|
| Q |
201 |
aagtataatc |
210 |
Q |
| |
|
||||| |||| |
|
|
| T |
34007822 |
aagtacaatc |
34007831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 33999843 - 34000052
Alignment:
| Q |
1 |
acacgaacttgaatccctctccaccaccttgtgtttgatttgccaccatctaagcctgcttcacatcacatttcatgaagctttcccaagttggaaacat |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
33999843 |
acacgaacttgaatccctctccaacaccttgtgtgtgatttgccaccatcttagccttcttcacatcacatttcatgaagctctgccaagttggaaacat |
33999942 |
T |
|
| Q |
101 |
gtatacgctgtgtgggaaacttgttgcatttggagcatcatacttgaaaactacacatgcataaatatcaaatatcaacattatataagattcatgccgt |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33999943 |
gtatacactgtgtgggaaacttgttgcatttggagcatcatacttgaaaactacacatgcataaatatcaaatatcaacattatataagattcatgccgt |
34000042 |
T |
|
| Q |
201 |
aagtataatc |
210 |
Q |
| |
|
||||| |||| |
|
|
| T |
34000043 |
aagtacaatc |
34000052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 33995080 - 33995267
Alignment:
| Q |
1 |
acacgaacttgaatccctctccaccaccttgtgtttgatttgccaccatctaagcctgcttcacatcacatttcatgaagctttcccaagttggaaacat |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33995080 |
acacgaacttgaatccctctccaacaccttgtgtgtgatttgccaccatcttagccttcttcacatcacatttcatgaagctttgccaagttggaaacat |
33995179 |
T |
|
| Q |
101 |
gtatacgctgtgtgggaaacttgttgcatttggagcatcatacttgaaaactacacatgcataaatatcaaatatcaacattatataa |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
33995180 |
gtatacgctgtgtgggaaacttgttgcatttggagcatcatatttgaaaactacacatggataaatatcaaatatcaacatcatataa |
33995267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 34003211 - 34003381
Alignment:
| Q |
1 |
acacgaacttgaatccctctccaccaccttgtgtttgatttgccaccatctaagcctgcttcacatcacatttcatgaagctttcccaagttggaaacat |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
34003211 |
acacgaacttgaatccctctccaacaccttgtgtgtgatttgccaccatcttagccttcttcacatcacatttcatgaagctctgccaagttggaaacat |
34003310 |
T |
|
| Q |
101 |
gtatacgctgtgtgggaaacttgttgcatttggagcatcatacttgaaaactacacatgcataaatatcaa |
171 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34003311 |
gtatacgctgtgtgggaaactcgtcgcatttggagcatcatatttgaaaactacacatgcataaatatcaa |
34003381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 33989090 - 33989253
Alignment:
| Q |
1 |
acacgaacttgaatccctctccaccaccttgtgtttgatttgccaccatctaagcctgcttcacatcacatttcatgaagctttcccaagttggaaacat |
100 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||| |||||||||| ||||| |||| || | |||||||||||||||||| | ||||||||||||||| |
|
|
| T |
33989090 |
acacgaacttgaacccctctccaacaccttgtgtgtgatttgccaacatcttagccattttaagatcacatttcatgaagctctgccaagttggaaacat |
33989189 |
T |
|
| Q |
101 |
gtatacgctgtgtgggaaacttgttgcatttggagcatcatacttgaaaactacacatgcataa |
164 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
33989190 |
gtatacgttgtgtgggaaactctttgcatttggagcatcatatttgaaaactacacatggataa |
33989253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University