View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14063_low_2 (Length: 746)
Name: NF14063_low_2
Description: NF14063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14063_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 304 - 692
Target Start/End: Original strand, 30506821 - 30507213
Alignment:
| Q |
304 |
gccttaaaagggtggtgcaaactcagactttcatcacttatattaatggcaatattaatattcctttattatgttggtgaatagacagagaaatggatgc |
403 |
Q |
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| T |
30506821 |
gccttaaaagggtggtgcaaactcagactttcatcacttatattaatggcaatattaatattcctttattatgttggtgaatagacagagaaatggatgc |
30506920 |
T |
|
| Q |
404 |
tgttgct----gctagggcttttttatgaaaatagaaaaacaagggatgtacagtaaattgagatggcgacaggaaaaagtatgaaaggtaaaaattggg |
499 |
Q |
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| T |
30506921 |
tgttgctacttgctagggcttttttatgaaaatagaaaaacaagggatgtacagtagtttgagatggcgacaggaaaaagtatgaaaggtaaaaattggg |
30507020 |
T |
|
| Q |
500 |
gtaaagaacatgattctgttttcttcacactataggttgaaactttgaatgacagttcctttctcattgactggtatgcctctattaatttccccctttc |
599 |
Q |
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| T |
30507021 |
gtaaagaacatgattctgttttcttcacactataggttgaaactttgaatgacagttcctttctcattgactggtatgcctctattaatttccccctttc |
30507120 |
T |
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| Q |
600 |
tttttactaccattgtatttcccttccctagagagaaaaataaaactttaatttcttatactgttttgtccctatctttgtttctcacagcca |
692 |
Q |
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| T |
30507121 |
tttttactaccattttatttcccttccctagagagagaaataaaactttaatttcttatgctgttttgtccctatctttgtttctcacagcca |
30507213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 30506534 - 30506699
Alignment:
| Q |
16 |
tacttgtatcgaataaatattaagtgttggacaactgaaaagttgtcaaaataagtaatacggaagaagaaaaaggattttgaataatgatatttgtaaa |
115 |
Q |
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| T |
30506534 |
tacttgtgtcgaataaatattgagtgttggacaactgaaaagttgtcaaaataagtaatacggaagaagaaaaaggactttgaataatgatagctgtaaa |
30506633 |
T |
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| Q |
116 |
actattttgtaacaacttttaaggcaacat-tattttttctttctttttataggttaaaaacaatagagaaa |
186 |
Q |
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| T |
30506634 |
accattttgtaacaacttttaagataatatatattttt------tttttataggttaaaaacaatagagaaa |
30506699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 30506718 - 30506767
Alignment:
| Q |
199 |
gtagaaacaaaatataaagtataagagatgtaattgttcaaatgtacagtca |
250 |
Q |
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| T |
30506718 |
gtagaaacaaaatataa-gtataagagatgtaattgttcaaa-gtacagtca |
30506767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 96 - 180
Target Start/End: Original strand, 9882551 - 9882634
Alignment:
| Q |
96 |
tgaataatgatatttgtaaaactattttgtaacaacttttaaggcaacattattttttctttctttttataggttaaaaacaata |
180 |
Q |
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| T |
9882551 |
tgaataatgatatttgtacaattatttggtgacaacttttgcggcaa-atttctttttctttcgttttattggtcaaaaacaata |
9882634 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 135
Target Start/End: Complemental strand, 37848594 - 37848559
Alignment:
| Q |
100 |
taatgatatttgtaaaactattttgtaacaactttt |
135 |
Q |
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| T |
37848594 |
taatgatatttgtataactattttgtaacaactttt |
37848559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 186
Target Start/End: Original strand, 38627330 - 38627420
Alignment:
| Q |
95 |
ttgaataatgatatttgtaaaactattttgtaacaacttttaaggcaacattattttttctttctttttataggttaaaaacaatagagaaa |
186 |
Q |
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|||| |||||||||||||| | ||||||||| | |||||||||| ||| |||| |||||| |||| |||| ||| |||||||||| ||||| |
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| T |
38627330 |
ttgagtaatgatatttgtacatctattttgtgataacttttaagacaatatta-tttttccctcttcttattggtcaaaaacaatatagaaa |
38627420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 135
Target Start/End: Complemental strand, 42225842 - 42225799
Alignment:
| Q |
92 |
attttgaataatgatatttgtaaaactattttgtaacaactttt |
135 |
Q |
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| T |
42225842 |
attttgagaaatgatatttgtaaaaccattttgtaacaactttt |
42225799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 184
Target Start/End: Complemental strand, 49886838 - 49886760
Alignment:
| Q |
105 |
atatttgtaaaactattttgtaacaacttttaaggcaacattattttttctttctttttataggttaaaaacaatagaga |
184 |
Q |
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| T |
49886838 |
atatttgtacaactatttttaaacaacttttaggacaaccttattatt-ctctttttttattggttaaaaacaatagaga |
49886760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 186
Target Start/End: Complemental strand, 33511781 - 33511696
Alignment:
| Q |
100 |
taatgatatttgtaaaactattttgtaacaacttttaaggcaacattattttttctttctttttataggttaaaaacaatagagaaa |
186 |
Q |
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|||||||||||||| ||||||||||| | ||||||| | ||||||| || |||| |||| |||| ||| |||||||||||||||| |
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| T |
33511781 |
taatgatatttgtacaactattttgtgaaaacttttgggacaacatt-cttcttctctcttcttattggtcaaaaacaatagagaaa |
33511696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 135
Target Start/End: Original strand, 42815408 - 42815442
Alignment:
| Q |
101 |
aatgatatttgtaaaactattttgtaacaactttt |
135 |
Q |
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| T |
42815408 |
aatgatatttgtacaactattttgtaacaactttt |
42815442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 42640840 - 42640881
Alignment:
| Q |
94 |
tttgaataatgatatttgtaaaactattttgtaacaactttt |
135 |
Q |
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|||||| ||||||||||||| ||||||||| ||||||||||| |
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| T |
42640840 |
tttgaaaaatgatatttgtacaactattttctaacaactttt |
42640881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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