View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14063_low_4 (Length: 678)
Name: NF14063_low_4
Description: NF14063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14063_low_4 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 627; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 1 - 663
Target Start/End: Complemental strand, 38118777 - 38118115
Alignment:
| Q |
1 |
atatttgcccaagttggtgtggtcctcatagttgaatttggaaagcattgaaataacaatttttcttttatgaagtcgcatttagttctttgaatataag |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38118777 |
atatttgcccaagttggtgtggtcctcatagttgaatttggaaggcattgaaataacaatttttcttttatgaagtcacatttagttctttgaatataag |
38118678 |
T |
|
| Q |
101 |
aatgtaaatcgatctgttcgatgagaaaggttgagtggcaacagtggcagagaatgtttcgatgtgatggtaatagttttcattttgaatttaaaagcct |
200 |
Q |
| |
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||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38118677 |
aatgtaaattgacctgttcgatgagaaaggttgagtggcaacagtggccgagaatgtttcgatgtgatggtaatagttttcattttgaatttaaaagcct |
38118578 |
T |
|
| Q |
201 |
tgtgattgtcatgatgcaacaatagtcgtaaaaagatgttttagcacagacaattaattgatgttcttaaaattaaagggccaaaatacatacttcgtaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38118577 |
tgtgattgtcatgatgcaacaatagtcgtaaaaagatgttttagcacagacaattaattgatgttgttaaaattaaagggccaaaatacatacttcgtaa |
38118478 |
T |
|
| Q |
301 |
ttttgaggagtaaattgtccgatccttacactttgaagatcaatttagagattcactaataatcttatcttttcccttctaaatcatatctatgagtatt |
400 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38118477 |
ttttgaggactaaattgtccgatccttacactttgaagatcaaattagagattcactaataatcttatcttttcccttctaaatcatatctatgagtatt |
38118378 |
T |
|
| Q |
401 |
ctttcaatcggaactgaaccttgctgatgaaagactgaccaaatctccaactagagggtaccacattaatagctgtgcgagtctttccattactgagttg |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38118377 |
ctttcaatcggaactgaaccttgctgatgaaagactgaccaaatctccaactagagggtaccacattaatagctgtacgagtctttccattactgagttg |
38118278 |
T |
|
| Q |
501 |
gactctgaaggacaggctctgaccatttagatagctcaagctttgccagttaacaccccaattccttgacatggtttcccagtttttcattttagaccct |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38118277 |
gactctgaaggacaggctctgaccatttagatagctcaagctttgccagttaacaccccaattccttgacatggtttcccagtttttcattttagaccct |
38118178 |
T |
|
| Q |
601 |
ttgatccaaactttggagatatcccctgccccctacattgcttataagcactagttcagaata |
663 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38118177 |
ttgatccaaactttggagatatcccctgccccctacattgcttataagcactagttcagaata |
38118115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 386 - 663
Target Start/End: Complemental strand, 38166028 - 38165749
Alignment:
| Q |
386 |
atatctatgagtattctttcaatcggaactgaaccttgctgatgaaagactgaccaaatctccaactagagggtaccacattaatagctgtgcgagtctt |
485 |
Q |
| |
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|||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||| |
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| T |
38166028 |
atatttatgagtatcctttcaatcagaactgaaccttgctgatgaaagactgaccaaatctccaactagagggtaccacattaacagccgtgagagtctt |
38165929 |
T |
|
| Q |
486 |
tccattactgagttggactctgaaggacaggctctgaccatttagatagctcaagctttgccagttaacaccccaattccttgacatggtttcccagttt |
585 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||| |||||||| | |||||||||| |
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| T |
38165928 |
tccattactgagttggactctgaaggacagactctgaccatttagatagcttaagctttgccagttagcaccccaatttcttgacatagattcccagttt |
38165829 |
T |
|
| Q |
586 |
ttcattttagaccctttgatccaaactttggagatatcccctg--ccccctacattgcttataagcactagttcagaata |
663 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||| |
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| T |
38165828 |
ctcattttagaccctttgatccaaactttggagatatcacctgctccccctacattgcttataagcactagttcaaaata |
38165749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 406 - 614
Target Start/End: Original strand, 45511805 - 45512013
Alignment:
| Q |
406 |
aatcggaactgaaccttgctgatgaaagactgaccaaatctccaactagagggtaccacattaatagctgtgcgagtctttccattactgagttggactc |
505 |
Q |
| |
|
|||| ||||||||| || || || ||||||| ||||||||||| | || ||| | |||||||||||||| |||||||| ||||| ||||||| | || |
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| T |
45511805 |
aatcagaactgaacgttacttttgtaagactggccaaatctccagttggaaggtgcaacattaatagctgtacgagtcttcccatttttgagttgaattc |
45511904 |
T |
|
| Q |
506 |
tgaaggacaggctctgaccatttagatagctcaagctttgccagttaacaccccaattccttgacatggtttcccagtttttcattttagaccctttgat |
605 |
Q |
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| || || | ||| |||||||| |||||||| | ||||||||| ||| ||||||||||| ||||||| | |||||| || ||| |||| || ||||| || |
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| T |
45511905 |
taaatgataagctttgaccattgagatagcttaggctttgccaattagcaccccaattcattgacattggttcccatttattcttttttgatccttttat |
45512004 |
T |
|
| Q |
606 |
ccaaacttt |
614 |
Q |
| |
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||||||||| |
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| T |
45512005 |
ccaaacttt |
45512013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 431 - 614
Target Start/End: Original strand, 45506370 - 45506553
Alignment:
| Q |
431 |
aagactgaccaaatctccaactagagggtaccacattaatagctgtgcgagtctttccattactgagttggactctgaaggacaggctctgaccatttag |
530 |
Q |
| |
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||||||| ||||||||||| | || ||| | |||||||||||||| |||||||| ||||| ||||||| | ||| || || | ||| |||||||| || |
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| T |
45506370 |
aagactggccaaatctccagttggaaggtgcaacattaatagctgtacgagtcttcccatttttgagttgaattctaaatgataagctttgaccattgag |
45506469 |
T |
|
| Q |
531 |
atagctcaagctttgccagttaacaccccaattccttgacatggtttcccagtttttcattttagaccctttgatccaaacttt |
614 |
Q |
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|||||| | ||||||||| ||| ||||||||||| ||||||| | |||||| || ||| |||| || ||||| ||||||||||| |
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| T |
45506470 |
atagcttaggctttgccaattagcaccccaattcattgacattggttcccatttattcttttttgatccttttatccaaacttt |
45506553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 115 - 170
Target Start/End: Original strand, 12516076 - 12516131
Alignment:
| Q |
115 |
tgttcgatgagaaaggttgagtggcaacagtggcagagaatgtttcgatgtgatgg |
170 |
Q |
| |
|
||||||||||||| |||||||||||||||| || |||||||| |||| |||||||| |
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|
| T |
12516076 |
tgttcgatgagaacggttgagtggcaacagcggtagagaatgcttcggtgtgatgg |
12516131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 12731754 - 12731703
Alignment:
| Q |
122 |
tgagaaaggttgagtggcaacagtggcagagaatgtttcgatgtgatggtaa |
173 |
Q |
| |
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|||||| |||||||| ||||||| |||||||||||||||| ||||| ||||| |
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| T |
12731754 |
tgagaacggttgagtagcaacagcggcagagaatgtttcggtgtgacggtaa |
12731703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 111 - 173
Target Start/End: Original strand, 24647176 - 24647238
Alignment:
| Q |
111 |
gatctgttcgatgagaaaggttgagtggcaacagtggcagagaatgtttcgatgtgatggtaa |
173 |
Q |
| |
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||||| |||| |||||| |||||||| ||||||||| ||||||||||| ||||||| ||||| |
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|
| T |
24647176 |
gatcttttcggtgagaacggttgagtagcaacagtgacagagaatgttctgatgtgacggtaa |
24647238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 379616 - 379648
Alignment:
| Q |
124 |
agaaaggttgagtggcaacagtggcagagaatg |
156 |
Q |
| |
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|||| |||||||||||||||||||||||||||| |
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| T |
379616 |
agaacggttgagtggcaacagtggcagagaatg |
379648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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