View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14063_low_6 (Length: 530)
Name: NF14063_low_6
Description: NF14063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14063_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 20 - 516
Target Start/End: Complemental strand, 4597462 - 4596963
Alignment:
| Q |
20 |
cttgttttccctctggttcttccttctctttatttctagaacaataaaataaaaaacaggtttcagcattaggcatttccctttaaacttttgtttataa |
119 |
Q |
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| T |
4597462 |
cttgttttccctctgattcttccttctcttaattgctagaacaataaaataaaaaacaggtttcagcattaggcatttccctttaaacttttctttctaa |
4597363 |
T |
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| Q |
120 |
attgctttatgtaagaccattgtgcataccttaggcatttccctttaaacatgctaattacctagaatttcttgtcaaattttccaccacaagctgtggt |
219 |
Q |
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| T |
4597362 |
attgctttatgtaagaccatagtgcataccttaggcatttccctttaaacatgctaattacctagaatttcttgtcaaattttccaccacaagctgtggt |
4597263 |
T |
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| Q |
220 |
agttgctgctacgttgttggtaaatgaagaaatataaccacctaccatccaacactttcaacaaacc-aaaatgtctaaatcaattcccttgcttgacac |
318 |
Q |
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| T |
4597262 |
agttgctgctacgttgttggtaaatgaagaaatataaccacctaccatccaacaatttcaacaaaccaaaaatgtctaaatcaattcccttgcttcaaac |
4597163 |
T |
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| Q |
319 |
caaaatgatttctatggcctatgttgtaaaaacaaaagccaatttcaatcacaccctccatgtgacatgatagttgaaaattggttgtttgtaaaaatag |
418 |
Q |
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| T |
4597162 |
caaaatgatctctatggcctatgttgtaaaaacaaaagccaatttcaatcacaccctccatgtgacatgatagttgaaaattggttgtttgtaaaaatag |
4597063 |
T |
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| Q |
419 |
gagagaaaaaagaatgaagattcagattatataaaatcaacctc--tatatatagaataacatgcccaaaataaaccatgtttgtgcacataagaataat |
516 |
Q |
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| T |
4597062 |
gagagaaaaaagaatgaagattcagattatataaaatcaacctctatatatatagaataacatgcccaaaataaaccatgtttgtgcacataagaataat |
4596963 |
T |
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