View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14063_low_7 (Length: 523)
Name: NF14063_low_7
Description: NF14063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14063_low_7 |
 | |
|
| [»] scaffold0627 (2 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 442; Significance: 0; HSPs: 20)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 20 - 497
Target Start/End: Complemental strand, 8644419 - 8643942
Alignment:
| Q |
20 |
attactttacatttgcgatacatattcttttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagatt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
8644419 |
attactttacatttgcgatacatattcttttcgtgatgttgcaatgtgggttatgaatgaatatgacattggagaatcatggactaaggtttacaacatt |
8644320 |
T |
|
| Q |
120 |
gatactttggtcagtcctttgggcagacctgattcgcagcgttatggtttatgttggccggtaaaacactttgaagagggggctgccatattgttatatc |
219 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8644319 |
gatactttgatcagtcctttgggcagacctgattcgcagcgttatggtttatgttggccggtaaaaaactttgaagagggggctgccatattgttatatc |
8644220 |
T |
|
| Q |
220 |
attcctgcaattgtcttatctactatgaacccgagaaacatgctttcaaagtttttcgaattcacggcacttcttccgaatttgttgaaataattccaca |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8644219 |
attcctgcaattgtcttatctactatgaacccaagaaacatgctttcaaagtttttcgaattcacggcatttcttccgaatttgttgaaataattccaca |
8644120 |
T |
|
| Q |
320 |
tgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccactcaaggtgagaatgtagctgctaagattttatt |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8644119 |
tgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatactgagatgctgaatatccactcaaggtaagaatgtagctgctaagattttatt |
8644020 |
T |
|
| Q |
420 |
ttgattgacaaattgaatttgatgctcccttacaaatcatacaaaccctttcccctaaatatatatgtgagcttccta |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8644019 |
ttgattgacaaattgaatttgatgctcccttacaaatcatacaaaccctttcccctaaatatatatgtgagcttccta |
8643942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 20 - 440
Target Start/End: Complemental strand, 8637074 - 8636654
Alignment:
| Q |
20 |
attactttacatttgcgatacatattcttttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagatt |
119 |
Q |
| |
|
||||||||| ||||| ||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8637074 |
attactttatatttgtgatacatcttttttccgtgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaacatc |
8636975 |
T |
|
| Q |
120 |
gatactttggtcagtcctttgggcagacctgattcgcagcgttatggtttatgttggccggtaaaacactttgaagagggggctgccatattgttatatc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8636974 |
gatactttggtcagtcctttgggcagacctgattcgcagcgttatggtatatgatggccggtaaaacactttgaagagggggctgccatattgttatatc |
8636875 |
T |
|
| Q |
220 |
attcctgcaattgtcttatctactatgaacccgagaaacatgctttcaaagtttttcgaattcacggcacttcttccgaatttgttgaaataattccaca |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
8636874 |
attcctgcaattgtcttatctactatgaacccgagaaacttggtttcaaagtttttagaattcaaggcacttcttccgagtttgttgaaataattccaca |
8636775 |
T |
|
| Q |
320 |
tgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccactcaaggtgagaatgtagctgctaagattttatt |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||| | |||| |||||||| |
|
|
| T |
8636774 |
tgttccaagtctaatctcattgaaggatgtcgtgaaaggagacaatatcgaggtgctgaatatccactcaaggttagaatgtagattctaacattttatt |
8636675 |
T |
|
| Q |
420 |
ttgattgacaaattgaatttg |
440 |
Q |
| |
|
|||||||| |||| ||||||| |
|
|
| T |
8636674 |
ttgattgagaaatcgaatttg |
8636654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 20 - 414
Target Start/End: Complemental strand, 8678021 - 8677618
Alignment:
| Q |
20 |
attactttacatttgcgatacatattcttttcgtgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagatt |
119 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
8678021 |
attactttacatttgcgatacatatcctttccgtgatgttgcaatgtgggatatgaatgaatatggcattggagaatcatggactaaggtttacaacatt |
8677922 |
T |
|
| Q |
120 |
gatactttggtc---------agtcctttgggcagacctgattcgcagcgttatggtttatgttggccggtaaaacactttgaagagggggctgccatat |
210 |
Q |
| |
|
|||| | ||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8677921 |
gatattgtggtccgtcctgtcagtcctttgggcagacctgattcgcggcattatggtttatgttggccggtaaaacactttgaagagggtgctgccatat |
8677822 |
T |
|
| Q |
211 |
tgttatatcattcctgcaattgtcttatctactatgaacccgagaaacatgctttcaaagtttttcgaattcacggcacttcttccgaatttgttgaaat |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8677821 |
tgttatatcattcctgcaattgtcttatctactatgaacccgagaaacatggtttcaaagtttttcgaattcacggcacttcttccgaatttgttgaaat |
8677722 |
T |
|
| Q |
311 |
aattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccactcaaggtgagaatgtagctgctaa |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8677721 |
aattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccactcaaggtaagaatgtagctgctaa |
8677622 |
T |
|
| Q |
411 |
gatt |
414 |
Q |
| |
|
|||| |
|
|
| T |
8677621 |
gatt |
8677618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 53 - 421
Target Start/End: Complemental strand, 8535675 - 8535307
Alignment:
| Q |
53 |
tgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactttggtcagtcctttgggcagacctgat |
152 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||| ||||| || || | || | |
|
|
| T |
8535675 |
tgatgtttcaatgtgggttatgaatgaatatggcattggagaatcatggactaagatttacaacattgatacttcattcaatccttcggaaagtcgtgtt |
8535576 |
T |
|
| Q |
153 |
tcgcagcgttatggtttatgttggccggtaaaacactttgaagagggggctgccatattgttatatcattcctgcaattgtcttatctactatgaacccg |
252 |
Q |
| |
|
| | | | ||||||||| | ||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
8535575 |
ccacggagatatggtttaagctggccaataaaacactttgaagaaggtgctgccatattgttatatcattcctgcaattgttttatctactatgaacctg |
8535476 |
T |
|
| Q |
253 |
agaaacatgctttcaaagtttttcgaattcacggcacttcttccgaatttgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgt |
352 |
Q |
| |
|
||||| ||| ||| |||||||||||||| |||| | | ||| | ||| ||||| |||| ||||| ||||||||||||| ||||||||||||||| | |
|
|
| T |
8535475 |
agaaatatggattcgaagtttttcgaatttacgggagtagttcaaatttttttgaagtaatcccacacattccaagtctaatttcattgaaggatgtttt |
8535376 |
T |
|
| Q |
353 |
gaaaggagacaatattgaggtgctgaatatccactcaaggtgagaatgtagctgctaagattttatttt |
421 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
8535375 |
gaaaggtgacaatattgaggttctgaatatccactcaaggtaagaatgtagcttctaagattttatttt |
8535307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 53 - 421
Target Start/End: Original strand, 9074655 - 9075020
Alignment:
| Q |
53 |
tgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactttggtcagtcctttgggcagacctgat |
152 |
Q |
| |
|
||||||| || |||||||||||||||||||||| |||| ||||||||||||||| |||||||| |||||||||| | ||| ||||| |||| | | | | |
|
|
| T |
9074655 |
tgatgtttcagtgtgggttatgaatgaatatggtattgaagaatcatggactaaagtttacaacattgatacttcgttcaatccttcgggctgtcttatt |
9074754 |
T |
|
| Q |
153 |
tcgcagcgttatggtttatgttggccggtaaaacactttgaagagggggctgccatattgttatatcattcctgcaattgtcttatctactatgaacccg |
252 |
Q |
| |
|
| | ||| |||||||| |||| |||||||||||||||| || |||||||||||||||||||||| || ||||||| |||||| ||||||||| | |
|
|
| T |
9074755 |
acatggggttcaggtttatg---gccgataaaacactttgaagaaggtgctgccatattgttatatcattgctacaattgttttatcttctatgaacctg |
9074851 |
T |
|
| Q |
253 |
agaaacatgctttcaaagtttttcgaattcacggcacttcttccgaatttgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgt |
352 |
Q |
| |
|
||||| ||| |||||||||||||||||||| || | | ||| | ||| ||||| |||| |||||| ||||||||||||| |||||||||||||| | |
|
|
| T |
9074852 |
agaaatatggattcaaagtttttcgaattcatgggagtcattcaaagttttttgaagtaatcccacatattccaagtctaatttcattgaaggatgtctt |
9074951 |
T |
|
| Q |
353 |
gaaaggagacaatattgaggtgctgaatatccactcaaggtgagaatgtagctgctaagattttatttt |
421 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||| | |||||||| |
|
|
| T |
9074952 |
gaaaggagacaatatcgaggtgctgaatatccactcaaggtaagaatgtagcttctaatactttatttt |
9075020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 55 - 393
Target Start/End: Complemental strand, 8529115 - 8528780
Alignment:
| Q |
55 |
atgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactttggtcagtcctttgggcagacctgattc |
154 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||| | ||| |||||||| | || | | |
|
|
| T |
8529115 |
atgtttcaatgtgggttatgaatgaatatggcattggagaatcatggactaagatttacaacatcgatacttcgttcaatcctttggatcg---tgttcc |
8529019 |
T |
|
| Q |
155 |
gcagcgttatggtttatgttggccggtaaaacactttgaagagggggctgccatattgttatatcattcctgcaattgtcttatctactatgaacccgag |
254 |
Q |
| |
|
| | ||||||||||| | |||||| |||||||||||||||| || ||||||||||||| ||||||||||| ||||||| ||| |||||| ||||| || |
|
|
| T |
8529018 |
acggggttatggtttaagctggccgataaaacactttgaagaaggtgctgccatattgtcatatcattcctccaattgttttacctactacgaacctgaa |
8528919 |
T |
|
| Q |
255 |
aaacatgctttcaaagtttttcgaattcacggcacttcttccgaatt-tgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtg |
353 |
Q |
| |
|
||| ||| |||||||||||||||||||| || | || |||| | ||||| |||| ||||| ||||||||||||| ||||||||||||||| || |
|
|
| T |
8528918 |
aaatatgggttcaaagtttttcgaattcatggga-gtcggataaattattttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttg |
8528820 |
T |
|
| Q |
354 |
aaaggagacaatattgaggtgctgaatatccactcaaggt |
393 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
8528819 |
aaaggagtcaatattgaggttctgaatatccactcaaggt |
8528780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 158 - 399
Target Start/End: Original strand, 8548128 - 8548369
Alignment:
| Q |
158 |
gcgttatggtttatgttggccggtaaaacactttgaagagggggctgccatattgttatatcattcctgcaattgtcttatctactatgaacccgagaaa |
257 |
Q |
| |
|
|||| ||| ||| |||| |||||||||||||||||||||||| |||||| |||||||||||||||| | ||||| ||| |||||| | ||||| ||| |
|
|
| T |
8548128 |
gcgtcatgctttgtgtttgccggtaaaacactttgaagagggtgctgccgtattgttatatcattcattggattgttttacttactataaccccgataaa |
8548227 |
T |
|
| Q |
258 |
catgctttcaaagtttttcgaattcacggcacttcttccgaatttgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaag |
357 |
Q |
| |
|
||| |||||| |||||||||||| ||| ||||||| ||| ||||| |||||| |||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
8548228 |
tatggagtcaaagattttcgaattcatggctcttcttcacaatcatttgaagtaattcaacatattccaagtctaatctcattgaaggatgtcatgaaag |
8548327 |
T |
|
| Q |
358 |
gagacaatattgaggtgctgaatatccactcaaggtgagaat |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
8548328 |
gagacaatattgaggtgctgaatatccactcaaagtaagaat |
8548369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 64 - 420
Target Start/End: Complemental strand, 8641534 - 8641186
Alignment:
| Q |
64 |
tgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgata---ctttggtcagtcctttgggcagacctgat---tcgca |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||| |||| | |||||||| |||| | | |
|
|
| T |
8641534 |
tgtgggttatgaatgaatatggcattggagaatcatggactaaggcttacaacattgataatacttcagtcaattctttgggctatcctggtctcttttg |
8641435 |
T |
|
| Q |
158 |
gcgttatggtttatgttggccggtaaaacactttgaagagggggctgccatattgttatatcattcctgcaattgtcttatctactatgaacccgagaaa |
257 |
Q |
| |
|
| |||||||| ||||||||||||||| |||||||||||| || ||||| ||| |||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
8641434 |
gggttatggtgtatgttggccggtaatacactttgaagatggtgctgcgttatggttatatcattcctgcaattgt-ttatctactatgaacccggga-- |
8641338 |
T |
|
| Q |
258 |
catgctttcaaagtttttcgaattcacggcacttcttccgaatttgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaag |
357 |
Q |
| |
|
| ||||||||| |||||| || |||| ||| ||| |||||| ||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8641337 |
------tgcaaagttttcaaaattcatgggacttgttcagaaagagttgaagtaattccacatattccaagtctaatctcattgaaggatgtcgtgaaag |
8641244 |
T |
|
| Q |
358 |
gagacaatattgaggtgctgaatatccactcaaggtgagaatgtagctgctaagattttattt |
420 |
Q |
| |
|
| |||||||| ||| | ||||| ||||||||| ||||||| ||| |||| ||||||||| |
|
|
| T |
8641243 |
g----aatattgaagtgttaaatattcactcaaggcaagaatgttgcttctaa-attttattt |
8641186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 99 - 447
Target Start/End: Complemental strand, 9003598 - 9003247
Alignment:
| Q |
99 |
tggactaaggtttacaagattgatactttggtcagtcctttgggcagacctgattcgcagcgttatggtttatgttggccggtaaaacactttgaagagg |
198 |
Q |
| |
|
|||||||||||||||| |||||||||| | | |||||||||||| |||||| | | | | |||||| |||||||||||||||| ||||||||| |
|
|
| T |
9003598 |
tggactaaggtttacagcattgatacttccgccggtcctttgggcatacctgaatatccgtctagtggtttttgttggccggtaaaactgtttgaagaga |
9003499 |
T |
|
| Q |
199 |
gggctgccatattgttatatcattcctgcaattgtcttatctactatgaacccgagaaacatgctttcaaagtttttcgaattcacggcacttcttccga |
298 |
Q |
| |
|
| ||| ||||||||| ||| | || | ||||||| | |||||||||||||||||||||||| |||| |||||||| | ||||||| || || | |
|
|
| T |
9003498 |
gtgcttgcatattgttttatgaatcgtacaattgtttagtctactatgaacccgagaaacatggattcagagtttttcaagttcacggggctcaatcaaa |
9003399 |
T |
|
| Q |
299 |
atttgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccactca---aggtga |
395 |
Q |
| |
|
||| |||||| ||||||||||| ||||||||||||||||||||||||| | ||| || ||||||||| |||||||| ||||| || ||||| |||| | |
|
|
| T |
9003398 |
attagttgaagtaattccacatattccaagtctaatctcattgaaggaggctgtaaatggagacaatgttgaggtgttgaatgtctactcaaggaggtaa |
9003299 |
T |
|
| Q |
396 |
gaatgtagctgctaagattttattttgattgacaaattgaatttgatgctcc |
447 |
Q |
| |
|
| |||||||| |||| |||| ||||| ||| | |||| ||||||||||||| |
|
|
| T |
9003298 |
ggatgtagcttctaatatttgattttcattaagtaattaaatttgatgctcc |
9003247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 53 - 426
Target Start/End: Original strand, 1600230 - 1600585
Alignment:
| Q |
53 |
tgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactttggtcagtcctttgggcagacctgat |
152 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||| ||| |||||| | |
|
|
| T |
1600230 |
tgatgttccaatgtgggttatgaaggaatatggcattgaagaatcatggactaaggtttacaagtacgatacttcattcaatccttt------------t |
1600317 |
T |
|
| Q |
153 |
tcgcagcgttatggtttatgttggccggtaaaacactttgaagagggggctgccatattgttatatcattcctgcaattgtcttatctactatgaacccg |
252 |
Q |
| |
|
|| | ||| |||||||| |||| || ||||||||||||| || |||||||||||||||||| ||| | |||||| | ||||| |||||||| | |
|
|
| T |
1600318 |
tcatggtgttcgggtttatg---gccgatacaacactttgaagaaggtgctgccatattgttatatgattac---aattgtttaatctattatgaacctg |
1600411 |
T |
|
| Q |
253 |
agaaacatgctttcaaagtttttcgaattcacggcacttcttccgaatttgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgt |
352 |
Q |
| |
|
|||| || | ||||| |||| |||||| || | | ||| || | | |||||||||| || ||| ||||||||||||| |||||||||||||| | |
|
|
| T |
1600412 |
cgaaatatcgatgcaaagcttttgaaattcatgggagtcgttcagattgttttgaaataatcccgcatattccaagtctaatttcattgaaggatgtctt |
1600511 |
T |
|
| Q |
353 |
gaaaggagacaatattgaggtgctgaatatccactcaaggtgagaatgtagctgctaagattttattttgattg |
426 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| ||||||||||| | || |||||||||| |||| |
|
|
| T |
1600512 |
gaaaggggacaatattgaggtgctgaatatccactcaaggtaagaatgtagcttcaaatattttatttttattg |
1600585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 61 - 126
Target Start/End: Original strand, 2904938 - 2905003
Alignment:
| Q |
61 |
caatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactt |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
2904938 |
caatgtgggttatgaatgaatatggcattggagaatcatggactaagatttacaacattgatactt |
2905003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 2856824 - 2856895
Alignment:
| Q |
55 |
atgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactt |
126 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
2856824 |
atgttacaatgtgggttatgaatgaatatggcattggagaatcatggactattgtttacaacattgatactt |
2856895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 2874434 - 2874505
Alignment:
| Q |
55 |
atgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactt |
126 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
2874434 |
atgttacaatgtgggttatgaatgaatatggcattggagaatcatggactattgtttacaacattgatactt |
2874505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 2844997 - 2845068
Alignment:
| Q |
55 |
atgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactt |
126 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
2844997 |
atgttacaatgtgggttatgaatgaatatggcattggagaatcatggactattgtttacagcattgatactt |
2845068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 303 - 424
Target Start/End: Original strand, 2905126 - 2905250
Alignment:
| Q |
303 |
gttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatatt---gaggtgctgaatatccactcaaggtgagaat |
399 |
Q |
| |
|
|||||| | |||| |||| ||||||||||||| |||||||| ||||| ||||| ||||||||| || ||||||||||| ||| ||||||||| ||| |
|
|
| T |
2905126 |
gttgaagttattcaacatattccaagtctaatatcattgaaagatgtcgtgaatggagacaatgttgaggaggtgctgaacatctactcaaggtagtaat |
2905225 |
T |
|
| Q |
400 |
gtagctgctaagattttattttgat |
424 |
Q |
| |
|
|||||| ||| ||||||||||||| |
|
|
| T |
2905226 |
gtagcttataatattttattttgat |
2905250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 370
Target Start/End: Original strand, 2845149 - 2845273
Alignment:
| Q |
246 |
gaacccgagaaacatgctttcaaagtttttcgaattcacggcacttcttccgaatttgttgaaataattccacatgttccaagtctaatctcattgaagg |
345 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||| || || ||| | | |||||| ||||| | || ||||||||||||| |||||||| | |
|
|
| T |
2845149 |
gaacctgagaaacatgagttcaaagtttttcgaattcaagggacaactttaggagaagttgaagtaattgaatatattccaagtctaatatcattgaacg |
2845248 |
T |
|
| Q |
346 |
atgttgtgaaaggagacaatattga |
370 |
Q |
| |
|
|||| ||||||||||||||| |||| |
|
|
| T |
2845249 |
atgtcgtgaaaggagacaatgttga |
2845273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 370
Target Start/End: Original strand, 2857046 - 2857094
Alignment:
| Q |
322 |
ttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattga |
370 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||||||||||||||| |||| |
|
|
| T |
2857046 |
ttccaagtctaatatcattgaacgatgtcgtgaaaggagacaatgttga |
2857094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 380
Target Start/End: Original strand, 11354671 - 11354728
Alignment:
| Q |
323 |
tccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaat |
380 |
Q |
| |
|
|||| |||| |||||||||||||||||||| ||||||| ||| || ||||||| |||| |
|
|
| T |
11354671 |
tccaggtctcatctcattgaaggatgttgttaaaggaggcaacatcgaggtgcagaat |
11354728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 380
Target Start/End: Complemental strand, 11372722 - 11372665
Alignment:
| Q |
323 |
tccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaat |
380 |
Q |
| |
|
|||| |||| |||||||||||||||||||| ||||||| ||| || ||||||| |||| |
|
|
| T |
11372722 |
tccaggtctcatctcattgaaggatgttgttaaaggaggcaacatcgaggtgcagaat |
11372665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 370
Target Start/End: Original strand, 2874660 - 2874704
Alignment:
| Q |
326 |
aagtctaatctcattgaaggatgttgtgaaaggagacaatattga |
370 |
Q |
| |
|
||||||||| |||||||| ||||| ||||||||||||||| |||| |
|
|
| T |
2874660 |
aagtctaatatcattgaacgatgtcgtgaaaggagacaatgttga |
2874704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 1e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 53 - 370
Target Start/End: Complemental strand, 35780002 - 35779694
Alignment:
| Q |
53 |
tgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactttggtcagtcctttgggcagacctgat |
152 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||| |||||| ||||||||||||||||| ||||| |||| ||||| | || | ||| ||| | |
|
|
| T |
35780002 |
tgatgttacaatgtgggttatgaatgagcatggcattgaagaatcgtggactaaggtttacaacattgagacttcggtcaattctctaggctatcctatt |
35779903 |
T |
|
| Q |
153 |
tcgcagcgttatggtttatgttggccggtaaaacactttgaagagggggctgccatattgttatatcattcctgcaattgtcttatctactatgaacccg |
252 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||| ||||||||| |||||| | |
|
|
| T |
35779902 |
tcaccgcgttatggtttatgttggccggtaaaaccctttga---------tgccatattgttatatcattcatgcaattgttttatctactttgaacctg |
35779812 |
T |
|
| Q |
253 |
agaaacatgctttcaaagtttttcgaattcacggcacttcttccgaatttgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgt |
352 |
Q |
| |
|
||||| ||| | ||||||||||||||||| || ||| ||| ||| ||||||| ||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
35779811 |
agaaatatggatacaaagtttttcgaattcgtgggactcgttcaaaatctgttgaagtaattccacatattccaagtctaatatcattgaaggatgttgt |
35779712 |
T |
|
| Q |
353 |
gaaaggagacaatattga |
370 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
35779711 |
aaaaggagacaatattga |
35779694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 53 - 405
Target Start/End: Original strand, 48361784 - 48362138
Alignment:
| Q |
53 |
tgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactttggtcagtcctttgggcagacctgat |
152 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||| |||||||| ||||||||||||||| || ||||| | ||| ||||| | |||| || | |
|
|
| T |
48361784 |
tgatgtttcaatgtgggttatgaatgaatatggtattgaagaatcatagactaaggtttacaacatcaatactgcgttcaatccttcgagcagttttgct |
48361883 |
T |
|
| Q |
153 |
tcgcagcgttatggtttatgttggccggtaaaacactttgaagagggggctgccatattgttatatcattcctgcaattgtcttatctactatgaacccg |
252 |
Q |
| |
|
|| || || | |||| |||||| |||||||||||||||| || ||||||||||||||||||||||||| | | || | ||||| |||||||| | |
|
|
| T |
48361884 |
tcttggcattcagcttta---tggccgataaaacactttgaagaaggtgctgccatattgttatatcattcctacgaccgtttaatctattatgaacctg |
48361980 |
T |
|
| Q |
253 |
agaaacatgctttcaaagtttttcgaattcacggcacttcttccgaatttgttgaaataattccacatgttccaagtc-----taatctcattgaaggat |
347 |
Q |
| |
|
||||| || | ||||| ||||| |||||||| | | ||| | | | ||||| |||| |||||| ||||||||| |||| |||||||||||| |
|
|
| T |
48361981 |
agaaatatagatgcaaagcttttcatattcacgggagtcgttcaggttcttttgaagtaatcccacatattccaagtctaatttaatttcattgaaggat |
48362080 |
T |
|
| Q |
348 |
gttgtgaaaggagacaatattgaggtgctgaatatccactcaaggtgagaatgtagct |
405 |
Q |
| |
|
|| |||||||||| ||||| |||||| ||||| |||||||||||| ||||||||||| |
|
|
| T |
48362081 |
gtcttgaaaggagataatatggaggtgttgaatgtccactcaaggtaagaatgtagct |
48362138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 6e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 55 - 393
Target Start/End: Complemental strand, 9443276 - 9442941
Alignment:
| Q |
55 |
atgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactttggtcagtcctttgggcagacctgattc |
154 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||| | ||| |||||||| | || | | |
|
|
| T |
9443276 |
atgtttcaatgtgggttatgaatgaatatggcattggagaatcatggactaagatttacaacatcgatacttcgttcaatcctttggatcg---tgttcc |
9443180 |
T |
|
| Q |
155 |
gcagcgttatggtttatgttggccggtaaaacactttgaagagggggctgccatattgttatatcattcctgcaattgtcttatctactatgaacccgag |
254 |
Q |
| |
|
| | ||||||||||| | |||||| |||||||||||||||| || ||||||||||||| ||||||||||| ||||||| ||| |||||| ||||| || |
|
|
| T |
9443179 |
acggggttatggtttaagctggccgataaaacactttgaagaaggtgctgccatattgtcatatcattccttcaattgttttacctactacgaacctgaa |
9443080 |
T |
|
| Q |
255 |
aaacatgctttcaaagtttttcgaattcacggcacttcttccgaatt-tgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtg |
353 |
Q |
| |
|
||| ||| |||||||||||||||||||| || | || |||| | ||||| |||| | ||| ||||||||||||| ||||||||||||||| || |
|
|
| T |
9443079 |
aaatatgggttcaaagtttttcgaattcatggga-gtcggaaaaattattttgaagtaatccaacacattccaagtctaatttcattgaaggatgttttg |
9442981 |
T |
|
| Q |
354 |
aaaggagacaatattgaggtgctgaatatccactcaaggt |
393 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
9442980 |
aaaggagtcaatattgaggttctgaatatccactcaaggt |
9442941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 161 - 393
Target Start/End: Complemental strand, 5130876 - 5130640
Alignment:
| Q |
161 |
ttatggtttatgtt---ggccggtaaaacactttgaagagggggctgccatattgttatatcattcctgcaattgtcttatct-actatgaacccgagaa |
256 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||| || ||| || ||||||| ||||| |
|
|
| T |
5130876 |
ttatggtttatgtttttggccggtaaaacactttgaagagggtgctgccatattgctatatcattcctgcaactgttttgtcttaccatgaaccggagaa |
5130777 |
T |
|
| Q |
257 |
acatgctttcaaagtttttcgaattcacggcacttcttccgaatttgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaa |
356 |
Q |
| |
|
| || | |||||||||||||||||| || |||| ||| || ||||| ||||||||||| || |||||||||| ||| | |||||| |||||||| |
|
|
| T |
5130776 |
atatagatacaaagtttttcgaattcatgggacttgttcaaaaaagattgaagtaattccacatatttcaagtctaatttcactaaaggatattgtgaaa |
5130677 |
T |
|
| Q |
357 |
ggagacaatattgaggtgctgaatatccactcaaggt |
393 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5130676 |
ggagacaatattgaggtgctgaatattcactcaaggt |
5130640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 26324202 - 26324264
Alignment:
| Q |
53 |
tgatgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaa |
115 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
26324202 |
tgatgtttcaatgtgggttatgaatgaatatggcactggagaatcatggactaagatttacaa |
26324264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 304 - 399
Target Start/End: Complemental strand, 4583 - 4488
Alignment:
| Q |
304 |
ttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccactcaaggtgagaat |
399 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
4583 |
ttgaagtaattccacatattccaagtctaatctcattgaaggatgccgtgaaaggagacaatattgaggtgttgaatatccactcaaggtaagaat |
4488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 4819 - 4746
Alignment:
| Q |
55 |
atgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactttg |
128 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||| |||||||| |
|
|
| T |
4819 |
atgttacaatgtgggttatgaatgaatatggcattggtgaatcatggactaaggtttaccacattaatactttg |
4746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 6e-29; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 310 - 399
Target Start/End: Complemental strand, 16716264 - 16716175
Alignment:
| Q |
310 |
taattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatattgaggtgctgaatatccactcaaggtgagaat |
399 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
16716264 |
taattccacatattccaagtctaatctcattgaaggatgccgtgaaaggagagaatattgaggtgttgaatatccactcaaggtaagaat |
16716175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 16716518 - 16716447
Alignment:
| Q |
55 |
atgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaagattgatactt |
126 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
16716518 |
atgttacaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttaccacattgatactt |
16716447 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 16716409 - 16716363
Alignment:
| Q |
177 |
ccggtaaaacactttgaagagggggctgccatattgttatatcattc |
223 |
Q |
| |
|
||||||||||||||||||||||| |||| | |||||||||||||||| |
|
|
| T |
16716409 |
ccggtaaaacactttgaagagggtgctggcgtattgttatatcattc |
16716363 |
T |
|
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