View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14063_low_8 (Length: 496)

Name: NF14063_low_8
Description: NF14063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14063_low_8
NF14063_low_8
[»] chr5 (11 HSPs)
chr5 (4-481)||(41687782-41688243)
chr5 (281-481)||(41686350-41686550)
chr5 (255-474)||(41659332-41659548)
chr5 (257-478)||(41717779-41717997)
chr5 (257-474)||(41708707-41708921)
chr5 (1-84)||(41708474-41708557)
chr5 (160-236)||(14682610-14682687)
chr5 (27-84)||(41717572-41717629)
chr5 (380-472)||(14682416-14682508)
chr5 (1-53)||(41503276-41503328)
chr5 (182-231)||(14691036-14691086)


Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 4 - 481
Target Start/End: Complemental strand, 41688243 - 41687782
Alignment:
Q  4 atgcatgcagaaatttcataccagatgatgcaccttgagcatcattgctctttttgtggggtggttcatttgtttgcaaagaagcgttatcctcaatgtc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||                 |||||||||| ||||||||||||||||||    
T  41688243 atgcatgcagaaatttcataccagatgatgcaccttgagcatccttgctctttt-----------------gtttgcaaaggagcgttatcctcaatgtc 41688161  T
Q  104 cttgccaatctcaacattctgtttatctttgtcttgaaaatcagttatctcagcaagagcctcaccattcttcttctctgatttctctaattcactattt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41688160 cttgccaatctcaacattctgtttatctttgtcttgaaaatcagttatctcagcaagagcctcaccattcttcttctctgatttctctaattcactattt 41688061  T
Q  204 ttcaccccacatgcatttttt-cattctccaaaagacctccaactccaagatcattgctatcatcgacccatttttcattcaactttctcagctcacaaa 302  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41688060 ttcacctcacatgcatttttttcattctccaaaagacctccaactccaagatcattgctatcatcgacccatttttcattcaactttctcagctcacaaa 41687961  T
Q  303 cttcgaactccaattcaatgtctttctttcttggctttccgatgttgtctctctcaatcaaactagttttttgtttgacttccttcaacaatgtttcata 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41687960 cttcgaactccaattcaatgtctttctttcttggctttccgatgttgtctctctcaatcaaactagttttttgtttgacttccttcaacaatgcttcata 41687861  T
Q  403 attttgttgtgctcttttccctctttcacatagttcccctcttttcctcacatcttcctcaacttgaaaccttgttagt 481  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  41687860 attttgttgtgctcttttccctctttcacatagttcctctcttttcctcacatcttcctcaacttgaaaccttgttagt 41687782  T

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Target: chr5; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 281 - 481
Target Start/End: Original strand, 41686350 - 41686550
Alignment:
Q  281 ttcaactttctcagctcacaaacttcgaactccaattcaatgtctttctttcttggctttccgatgttgtctctctcaatcaaactagttttttgtttga 380  Q
    ||||||||||||||||||| |||||| |||||||||||| |||  ||||||||| ||| ||| ||| ||||||| |||  ||||||||||||||  || |    
T  41686350 ttcaactttctcagctcacgaacttctaactccaattcactgttcttctttcttagctctccaatgatgtctctatcacccaaactagttttttccttaa 41686449  T
Q  381 cttccttcaacaatgtttcataattttgttgtgctcttttccctctttcacatagttcccctcttttcctcacatcttcctcaacttgaaaccttgttag 480  Q
    |||||||||||||| |||||||||| | |||||||||| ||||||||||||| |||||| ||||||| |||| |||||||||| |||||||||| |||||    
T  41686450 cttccttcaacaatttttcataattattttgtgctcttatccctctttcacaaagttcctctctttttctcaaatcttcctcagcttgaaacctcgttag 41686549  T
Q  481 t 481  Q
    |    
T  41686550 t 41686550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 255 - 474
Target Start/End: Original strand, 41659332 - 41659548
Alignment:
Q  255 cattgctatcatcgacccatttttcattcaactttctcagctcacaaacttcgaactccaattcaatgtctttctttcttggctttccgatgttgtctct 354  Q
    ||||||||||||| ||||| |||   |||||||||||||||||||||||||| |||||||||||| | |  ||||||||| ||| ||  ||| ||||||     
T  41659332 cattgctatcatccacccactttcgcttcaactttctcagctcacaaacttccaactccaattcattattcttctttcttagctctctaatgatgtctcc 41659431  T
Q  355 ctcaatcaaactagttttttgtttgacttccttcaacaatgtttcataattttgttgtgctcttttccctctttcacatagttcccctcttttcctcaca 454  Q
     ||||  |||||||||||    || ||||||| ||||||||||||||||||    ||||| ||||| |||||||| ||||||||| ||||||| |||| |    
T  41659432 ttcaactaaactagtttt---cttaacttcctccaacaatgtttcataattactctgtgccctttttcctctttcgcatagttcctctctttttctcaaa 41659528  T
Q  455 tcttcctcaacttgaaacct 474  Q
    ||||| ||| ||||||||||    
T  41659529 tcttcttcagcttgaaacct 41659548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 257 - 478
Target Start/End: Original strand, 41717779 - 41717997
Alignment:
Q  257 ttgctatcatcgacccatttttcattcaactttctcagctcacaaacttcgaactccaattcaatgtctttctttcttggctttccgatgttgtctctct 356  Q
    ||||||||||  |||||||| || |||||||||||||| ||||||||||| |||||||||||| |||  ||||||||| ||| ||| ||| ||||| | |    
T  41717779 ttgctatcattcacccatttctccttcaactttctcagttcacaaacttctaactccaattcattgttcttctttcttagctctccaatggtgtcttttt 41717878  T
Q  357 caatcaaactagttttttgtttgacttccttcaacaatgtttcataattttgttgtgctcttttccctctttcacatagttcccctcttttcctcacatc 456  Q
    ||   ||  | ||||| |   | ||||||||||| ||  |||||||||| | |||||||||||||||| ||||||| |||||| ||||||| |||| |||    
T  41717879 cagctaagtttgttttct---taacttccttcaataacttttcataattattttgtgctcttttccctttttcacacagttcctctctttttctcaaatc 41717975  T
Q  457 ttcctcaacttgaaaccttgtt 478  Q
    ||||||  ||||||||||||||    
T  41717976 ttcctcggcttgaaaccttgtt 41717997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 257 - 474
Target Start/End: Original strand, 41708707 - 41708921
Alignment:
Q  257 ttgctatcatcgacccatttttcattcaactttctcagctcacaaacttcgaactccaattcaatgtctttctttcttggctttccgatgttgtctctct 356  Q
    ||||||||||  |||||||| || |||||||||||||| ||||||||||| |||||||||||| |||  ||||||||| ||| ||| ||| ||||| | |    
T  41708707 ttgctatcattcacccatttctccttcaactttctcagttcacaaacttctaactccaattcattgttcttctttcttagctctccaatggtgtcttttt 41708806  T
Q  357 caatcaaactagttttttgtttgacttccttcaacaatgtttcataattttgttgtgctcttttccctctttcacatagttcccctcttttcctcacatc 456  Q
    ||   ||  | ||||| |   | ||||||||||| ||  |||||||||| | |||||||||||||||| ||||||| |||||| ||||||| |||| |||    
T  41708807 cagctaagtttgttttct---taacttccttcaataacttttcataattattttgtgctcttttccctttttcacacagttcctctctttttctcaaatc 41708903  T
Q  457 ttcctcaacttgaaacct 474  Q
    ||||||  ||||||||||    
T  41708904 ttcctcggcttgaaacct 41708921  T

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Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 41708474 - 41708557
Alignment:
Q  1 gagatgcatgcagaaatttcataccagatgatgcaccttgagcatcattgctctttttgtggggtggttcatttgtttgcaaag 84  Q
    |||||||||||| || | ||||||| |||||||||||||||||||  |||||| |||||| |||||||||||||||||||||||    
T  41708474 gagatgcatgcataattgtcatacctgatgatgcaccttgagcattcttgctccttttgttgggtggttcatttgtttgcaaag 41708557  T

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Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 14682687 - 14682610
Alignment:
Q  160 gagcctcaccattcttcttctctgatttctctaattcactatttttcaccccacatgcattttt-tcattctccaaaa 236  Q
    ||||||||| ||||||||||  ||||||||| || |||||||||||||||||| |||||||||| ||||| |||||||    
T  14682687 gagcctcacaattcttcttcattgatttctccaactcactatttttcaccccaaatgcatttttctcattttccaaaa 14682610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 41717572 - 41717629
Alignment:
Q  27 gatgatgcaccttgagcatcattgctctttttgtggggtggttcatttgtttgcaaag 84  Q
    |||||||||||||||||||  |||||| |||||| |||||||||||||||||||||||    
T  41717572 gatgatgcaccttgagcattcttgctccttttgttgggtggttcatttgtttgcaaag 41717629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 472
Target Start/End: Complemental strand, 14682508 - 14682416
Alignment:
Q  380 acttccttcaacaatgtttcataattttgttgtgctcttttccctctttcacatagttcccctcttttcctcacatcttcctcaacttgaaac 472  Q
    ||||||||||||||| |||||||||| |  |||||| |||||||||| ||||| | |||| | || |||||||  |||||||||  |||||||    
T  14682508 acttccttcaacaatttttcataattattctgtgcttttttccctctctcacacatttcctccctcttcctcaattcttcctcagattgaaac 14682416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 41503276 - 41503328
Alignment:
Q  1 gagatgcatgcagaaatttcataccagatgatgcaccttgagcatcattgctc 53  Q
    |||||||||||| || || |||||||||||||||||||||||| || ||||||    
T  41503276 gagatgcatgcacaatttccataccagatgatgcaccttgagcgtccttgctc 41503328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 14691086 - 14691036
Alignment:
Q  182 tgatttctctaattcactatttttcaccccacatgcattttt-tcattctc 231  Q
    ||||||||| |||||||||||||||||| || |||||||||| ||||||||    
T  14691086 tgatttctccaattcactatttttcacctcagatgcatttttctcattctc 14691036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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