View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14064_low_1 (Length: 422)
Name: NF14064_low_1
Description: NF14064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14064_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 24 - 417
Target Start/End: Complemental strand, 38118919 - 38118526
Alignment:
| Q |
24 |
ggggtcttatttactcatgccggatcaaattgtgtcacttacatgtctttattcttgcatcagaatcctttagctacaaatcgggtcattgatagggatg |
123 |
Q |
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| T |
38118919 |
ggggtcttatttactcatgccggatcaaattgtgtcacttacatgtctttattcttgcatcagaatcctttagctacaaatcgggtcattgatagtgatg |
38118820 |
T |
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| Q |
124 |
gctggctaaatactggtgacataggttggattgctgcccaccattcaactggacggagtcgtaattctggtggtgtgattgttgttgaaggccgtgctaa |
223 |
Q |
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| T |
38118819 |
gctggctaaatactggtgacataggttggattgctgcccaccattcaactggacggagtcgtaattctggtggtgtgattgttgttgaaggccgtgctaa |
38118720 |
T |
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| Q |
224 |
agacaccattgtgctttcatcaggtagaacataagtttgcatatgttacttttcatgtggtaaataagctgtttgctgaatttcactaattgaatcaaat |
323 |
Q |
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| T |
38118719 |
agacaccattgtgctttcatcaggtagaacataagtttgcatatgttacttttcatgtggtaaataagctgtttgctgaatttcactaattgaatcaaat |
38118620 |
T |
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| Q |
324 |
attttgcaattacgggttactttccatttttcgaacccttaattacaactatgttgttttatctctgcataaaaagcctgttgcctttgcttct |
417 |
Q |
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| T |
38118619 |
attttgcaattacgggttactttccatttttcggacccttaattacaactatgttgttttatctctgcataaaaagcctgttgccattggttct |
38118526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 53 - 262
Target Start/End: Complemental strand, 38129226 - 38129017
Alignment:
| Q |
53 |
ttgtgtcacttacatgtctttattcttgcatcagaatcctttagctacaaatcgggtcattgatagggatggctggctaaatactggtgacataggttgg |
152 |
Q |
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| T |
38129226 |
ttgtgtcagttacatatctctattcttgtatcagaatccttcagccacaaatcaggccatagacaaggatggctggctgaatactggtgacataggttgg |
38129127 |
T |
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| Q |
153 |
attgctgcccaccattcaactggacggagtcgtaattctggtggtgtgattgttgttgaaggccgtgctaaagacaccattgtgctttcatcaggtagaa |
252 |
Q |
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||||||||| |||||||| |||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38129126 |
attgctgcctaccattcatctggacggagtcgtaattgtggcggtgtgattgttgttgaaggtcgtgctaaagacaccattgtgctttcatcaggtagaa |
38129027 |
T |
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| Q |
253 |
cataagtttg |
262 |
Q |
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| T |
38129026 |
cagaagtttg |
38129017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 73 - 254
Target Start/End: Original strand, 35111244 - 35111425
Alignment:
| Q |
73 |
tattcttgcatcagaatcctttagctacaaatcgggtcattgatagggatggctggctaaatactggtgacataggttggattgctgcccaccattcaac |
172 |
Q |
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|||| |||||| ||||||| ||||||||||| | || | | |||| |||||||||||| ||||||||||| |||| ||||||||| |||| ||||| || |
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| T |
35111244 |
tattattgcattagaatccattagctacaaaccaggccttggataaggatggctggctgaatactggtgatctagggtggattgctccccatcattctac |
35111343 |
T |
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| Q |
173 |
tggacggagtcgtaattctggtggtgtgattgttgttgaaggccgtgctaaagacaccattgtgctttcatcaggtagaaca |
254 |
Q |
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| T |
35111344 |
tgggcggagtcgtaactctagtggtgtgattgttgtggacggccgtgctaaagacactattgtgctttcaacaggtataaca |
35111425 |
T |
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