View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14064_low_2 (Length: 361)
Name: NF14064_low_2
Description: NF14064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14064_low_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 361
Target Start/End: Complemental strand, 4962708 - 4962366
Alignment:
| Q |
18 |
tattttactataataacaaaataaaagaaatttaataaagctcatcatctatctgatcataactttccccaccaccatatgctaaccttacaataaagtt |
117 |
Q |
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| T |
4962708 |
tattttactataataacaaaataaaagaaatttaataaagctcatcatctatctgatcataactttccccaccaccatatgctaaccttacaataaagtt |
4962609 |
T |
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| Q |
118 |
ataatttgcatgaaattcaatagtttgtataatgtaccgcatttgtttttccttaaaagaaagacatccaccatacgtacatatgaaacccacttttacn |
217 |
Q |
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| T |
4962608 |
ataatttgcatgaaattcaatagtttgtataatgtaccgcatttgtttttccttaaaagaaagacatccaccatacgtacatatgaaacccacttttac- |
4962510 |
T |
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| Q |
218 |
nnnnnnnnaatctttggaaaaatgcaccataaagcttctccaataacttttgttatgtggaatttaccatgttgaccctttcttttcatcctttaaatcc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4962509 |
ttttttttaatctttggaaaaatgcaccataaagcttctccaataacttttgttatgtggaatttaccatgttgaccctttcttttcatcctttaaatac |
4962410 |
T |
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| Q |
318 |
ccatctcatacaatgcagttcttcccttttcccgtcctttcctc |
361 |
Q |
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| T |
4962409 |
ccatctcatacaatgcagttcttcccttttcccttcctttcctc |
4962366 |
T |
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