View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14064_low_7 (Length: 235)
Name: NF14064_low_7
Description: NF14064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14064_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 34007493 - 34007290
Alignment:
| Q |
18 |
tgttcatttgcaacaacttgacatggctaactagctcttggaaaattggaattgcatgctgcagcttttgaattttatagttttctcttttgattttcaa |
117 |
Q |
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|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34007493 |
tgttcatttgcaacaacttgacatagttaactagctcttggaaaattggaattgcatgctgcagcttttgaattttatagttttctcttttgattttcaa |
34007394 |
T |
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| Q |
118 |
tatatgttccaataaattaaaataaatcgagttttcttattctatttgcacttatcaaaatatatgtaatgcatttgatacataaaagtaattgtggtaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
34007393 |
tatatgttccaataaattaaaataaatcgagttttcttattctatttgcacttatcaaaatatatgtaatgcatttgatacatcaaagcaattgtggtaa |
34007294 |
T |
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| Q |
218 |
taag |
221 |
Q |
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|||| |
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| T |
34007293 |
taag |
34007290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 34003083 - 34002935
Alignment:
| Q |
18 |
tgttcatttgcaacaacttgacatggctaactagctcttggaaaattggaattgcatgct----gcag--cttttgaattttatagttttctcttttgat |
111 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||| || |
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| T |
34003083 |
tgttcatttgcaacaacttgacatagctaactagctcttggaaaattggaattgcatgcttgctgcagggcttctgaattttatagttttctcttttaat |
34002984 |
T |
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| Q |
112 |
tttcaatatatgttccaataaattaaaataaatcgagttttcttattct |
160 |
Q |
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|||||||| | |||||| ||||||||||||| |||||||||||||||| |
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| T |
34002983 |
tttcaataaacgttccagcaaattaaaataaagcgagttttcttattct |
34002935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 111 - 221
Target Start/End: Complemental strand, 33992621 - 33992512
Alignment:
| Q |
111 |
ttttcaatatatgttccaataaattaaaataaatcgagttttcttattctatttgcacttatcaaaatatatgtaatgcatttgatacataaaagtaatt |
210 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||| |
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| T |
33992621 |
tttttaatatatgttccaataaattaaaataaatcgagttt-cttattctatttgcacttatcaaaatatatgtaatacatttgatacatcaaagcaatt |
33992523 |
T |
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| Q |
211 |
gtggtaataag |
221 |
Q |
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||||||||||| |
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| T |
33992522 |
gtggtaataag |
33992512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 43 - 160
Target Start/End: Complemental strand, 33999686 - 33999571
Alignment:
| Q |
43 |
gctaactagctcttggaaaattggaattgcatgctgcagcttttgaattttatagttttctcttttgattttcaatatatgttccaataaattaaaataa |
142 |
Q |
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|||| |||||| |||||||||||||||||| ||| || ||| ||||| |||||||||||| ||| ||||||||||||||||||| ||||||||||||| |
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| T |
33999686 |
gctagctagcttttggaaaattggaattgctggcttcaacttctgaatgttatagttttct--tttaattttcaatatatgttccattaaattaaaataa |
33999589 |
T |
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| Q |
143 |
atcgagttttcttattct |
160 |
Q |
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|||||||||||||||||| |
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| T |
33999588 |
atcgagttttcttattct |
33999571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 33992873 - 33992809
Alignment:
| Q |
37 |
gacatggctaactagctcttggaaaattggaattgcatgctgcagcttttgaattttatagtttt |
101 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33992873 |
gacatagctaactagctcttggaaaattggaattgcatgctgcagcttttgaattttatagtttt |
33992809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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