View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14064_low_8 (Length: 233)
Name: NF14064_low_8
Description: NF14064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14064_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 6360976 - 6360755
Alignment:
| Q |
1 |
tgtgaatttgtaaatagtctatggactaaatattttggtataatcccattcattgctgggctctgatacaaatcatcttttgcaaccttcacaagcctcc |
100 |
Q |
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| T |
6360976 |
tgtgaatttggaaatagtctatggattaaatattttggtataatcccattcattgctgggctctgatacaaatcatcttttgcaaccttcacaagcctcc |
6360877 |
T |
|
| Q |
101 |
acacacctatcttgtattcttgggattttattgaaatcattccatgatgttctaaacctttgagggtaacatcgtccacaaacatgaagaaacacacatt |
200 |
Q |
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| T |
6360876 |
acacacctatcttgtattcttgggattttattgaaatcattccatgatgttctaaacctttgagggtaacatcgtccacaaacatgaagaaacacacatt |
6360777 |
T |
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| Q |
201 |
ttctagtgttttggttccaagt |
222 |
Q |
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||||||||||||| |||||||| |
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| T |
6360776 |
ttctagtgttttgattccaagt |
6360755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 6 - 172
Target Start/End: Original strand, 13033761 - 13033927
Alignment:
| Q |
6 |
atttgtaaatagtctatggactaaatattttggtataatcccattcattgctgggctctgatacaaatcatcttttgcaaccttcacaagcctccacaca |
105 |
Q |
| |
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||||| |||||||||||||| |||||||||| |||||||| |||||| || | |||| |||||||||||||||||||||||||||| |||| ||||| |
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| T |
13033761 |
atttggaaatagtctatggattaaatatttttgtataatcatattcatcacttgattctgttacaaatcatcttttgcaaccttcacaatcctctacaca |
13033860 |
T |
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| Q |
106 |
cctatcttgtattcttgggattttattgaaatcattccatgatgttctaaacctttgagggtaacat |
172 |
Q |
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|||||||||| | ||| |||||||||| |||| | |||||| ||||| | ||||||||||||||||| |
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| T |
13033861 |
cctatcttgtttgctttggattttattaaaattactccatggtgttcaagacctttgagggtaacat |
13033927 |
T |
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