View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14065_high_12 (Length: 222)

Name: NF14065_high_12
Description: NF14065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14065_high_12
NF14065_high_12
[»] chr8 (2 HSPs)
chr8 (18-143)||(3417157-3417282)
chr8 (188-222)||(37064815-37064849)
[»] chr7 (4 HSPs)
chr7 (18-135)||(18829551-18829668)
chr7 (22-116)||(44472350-44472444)
chr7 (18-116)||(22022449-22022547)
chr7 (22-63)||(4501952-4501993)
[»] chr4 (1 HSPs)
chr4 (35-116)||(6507968-6508049)
[»] chr5 (2 HSPs)
chr5 (187-222)||(4084877-4084912)
chr5 (187-220)||(31081996-31082029)
[»] chr3 (1 HSPs)
chr3 (187-222)||(10847289-10847324)
[»] chr1 (1 HSPs)
chr1 (188-222)||(37852521-37852555)


Alignment Details
Target: chr8 (Bit Score: 122; Significance: 9e-63; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 3417157 - 3417282
Alignment:
Q  18 gcaaatatatataggttgaatatccaagaaaatgaaagaaaaataatcaaatgataacctgtggacatccaaggctgaataatataaaaagacttgctac 117  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3417157 gcaaatatatatacgttgaatatccaagaaaatgaaagaaaaataatcaaatgataacctgtggacatccaaggctgaataatataaaaagacttgctac 3417256  T
Q  118 atacaaaagccattactcacaattac 143  Q
    ||||||||||||||||||||||||||    
T  3417257 atacaaaagccattactcacaattac 3417282  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 222
Target Start/End: Original strand, 37064815 - 37064849
Alignment:
Q  188 agtcaggatctgttgacacctggtgtcaacgaatt 222  Q
    |||||||||||||||||||| ||||||||||||||    
T  37064815 agtcaggatctgttgacaccaggtgtcaacgaatt 37064849  T

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Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 18829551 - 18829668
Alignment:
Q  18 gcaaatatatataggttgaatatccaagaaaatgaaagaaaaataatcaaatgataacctgtggacatccaaggctgaataatataaaaagacttgctac 117  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||| ||||||||||     
T  18829551 gcaaatacatatacgttgaatatccaagaaaatgaaagaaaaataatcaaatgataacatgtgaacatccaaggctaaataatataaatagacttgctat 18829650  T
Q  118 atacaaaagccattactc 135  Q
    ||||||||||||||||||    
T  18829651 atacaaaagccattactc 18829668  T

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Target: chr7; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 44472444 - 44472350
Alignment:
Q  22 atatatataggttgaatatccaagaaaatgaaagaaaaataatcaaatgataacctgtggacatccaaggctgaataatataaaaagacttgcta 116  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||    
T  44472444 atatatatacgttgaatatccaagaaaatgaaagaaaaataatcaaatgataacctatgaacatccaaggctaaataatataaaaagacttgcta 44472350  T

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Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 22022547 - 22022449
Alignment:
Q  18 gcaaatatatataggttgaatatccaagaaaatgaaagaaaaataatcaaatgataacctgtggacatccaaggctgaataatataaaaagacttgcta 116  Q
    ||||||||||| | |||||||||||||||||||||||| |||||||||||||| ||||||||| | |||||||||| ||||||||||||||||||||||    
T  22022547 gcaaatatatacacgttgaatatccaagaaaatgaaaggaaaataatcaaatgctaacctgtgaagatccaaggctaaataatataaaaagacttgcta 22022449  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 4501993 - 4501952
Alignment:
Q  22 atatatataggttgaatatccaagaaaatgaaagaaaaataa 63  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  4501993 atatatatacgttgaatatccaagaaaatgaaagaaaaataa 4501952  T

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Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 35 - 116
Target Start/End: Original strand, 6507968 - 6508049
Alignment:
Q  35 gaatatccaagaaaatgaaagaaaaataatcaaatgataacctgtggacatccaaggctgaataatataaaaagacttgcta 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  6507968 gaatatccaagaaaatgaaagaaaaataatcaaatgataacctgtgaacatccaaggctaaataatataaaaagacttgcta 6508049  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 4084877 - 4084912
Alignment:
Q  187 gagtcaggatctgttgacacctggtgtcaacgaatt 222  Q
    ||||||||||| ||||||||||||||||||||||||    
T  4084877 gagtcaggatccgttgacacctggtgtcaacgaatt 4084912  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 31081996 - 31082029
Alignment:
Q  187 gagtcaggatctgttgacacctggtgtcaacgaa 220  Q
    ||||||||||| ||||||||||||||||||||||    
T  31081996 gagtcaggatccgttgacacctggtgtcaacgaa 31082029  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 10847289 - 10847324
Alignment:
Q  187 gagtcaggatctgttgacacctggtgtcaacgaatt 222  Q
    ||||||||||| ||||||||||||||||||||||||    
T  10847289 gagtcaggatccgttgacacctggtgtcaacgaatt 10847324  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 222
Target Start/End: Original strand, 37852521 - 37852555
Alignment:
Q  188 agtcaggatctgttgacacctggtgtcaacgaatt 222  Q
    |||||||||| ||||||||||||||||||||||||    
T  37852521 agtcaggatccgttgacacctggtgtcaacgaatt 37852555  T

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