View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14065_high_3 (Length: 601)
Name: NF14065_high_3
Description: NF14065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14065_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-135; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 333 - 597
Target Start/End: Original strand, 47258691 - 47258955
Alignment:
| Q |
333 |
atatgcatggccttaaatttaaattctaatcattgggatgtgacttttaaggaatatttttgtcaatcactttaaatgactttattttaatgaataaaat |
432 |
Q |
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| T |
47258691 |
atatgcatggccttaaatttaaattctaatcattgggatgtgacttgtaaggaatatttttgtcaatcactttaaatgactttattttaatgaataaaat |
47258790 |
T |
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| Q |
433 |
ggcttatctttactcacaattggaaaattgatcatgtataaaggcatttttgtttaagatattttcagagtgaaatacattttgttttattctgctaaat |
532 |
Q |
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| T |
47258791 |
ggtttatctttactcacaattggaaaattgatcatgtataaaggcatttttgtttaagatattttcagagtgaaatacattttgttttattctgctaaat |
47258890 |
T |
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| Q |
533 |
actcagcttctcttccctttcattcaatttgaggatatggaatggaattcatattcatctcactc |
597 |
Q |
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| T |
47258891 |
actcagcttctcttccctttcattcaatttgaggatatggaatgaaattcatattcttttcactc |
47258955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 113 - 274
Target Start/End: Original strand, 47258483 - 47258644
Alignment:
| Q |
113 |
cttcatatgtcacaagtaacaattatttttgcattagaaatgtaaacagtaatcgattggctataactaagagtatacgattgaatgaagtttgatacat |
212 |
Q |
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| T |
47258483 |
cttcatatgtcacaagtaacaattatttttgcattagaaatgtaaacagtaatcgattggctataactaagagtatacgattgaatgaagtttgatacat |
47258582 |
T |
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| Q |
213 |
taacatcagaacaaagttaaaagaataaaaaggaagctaacatcagagaagtatgcaacaca |
274 |
Q |
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| T |
47258583 |
taacatcagaacaaagttaaaagaataaaaaggaagctaacatcagagaagtatgcagcaca |
47258644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 47258387 - 47258448
Alignment:
| Q |
17 |
gacacatgtaattacattatattaattcatttgttaaaattatcaccgttgttgacatatga |
78 |
Q |
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| T |
47258387 |
gacacatgtaattacattctattaattcatttgttaaaattattacagttgttgacatatga |
47258448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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