View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14065_high_6 (Length: 494)

Name: NF14065_high_6
Description: NF14065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14065_high_6
NF14065_high_6
[»] chr4 (22 HSPs)
chr4 (109-473)||(28165233-28165592)
chr4 (262-331)||(9802661-9802730)
chr4 (269-326)||(12103890-12103947)
chr4 (282-329)||(31871102-31871149)
chr4 (270-325)||(39727605-39727659)
chr4 (270-329)||(44647928-44647987)
chr4 (282-329)||(53919880-53919927)
chr4 (1-43)||(28165124-28165166)
chr4 (282-331)||(33982437-33982486)
chr4 (270-331)||(40480215-40480276)
chr4 (270-318)||(25196136-25196184)
chr4 (270-324)||(34235912-34235967)
chr4 (265-318)||(51230092-51230145)
chr4 (270-325)||(24395247-24395303)
chr4 (270-329)||(49446640-49446700)
chr4 (282-326)||(50115059-50115103)
chr4 (282-329)||(44646572-44646619)
chr4 (270-320)||(27706953-27707003)
chr4 (277-331)||(42197042-42197096)
chr4 (281-329)||(1696235-1696283)
chr4 (270-318)||(27346298-27346346)
chr4 (270-326)||(54543570-54543626)
[»] chr8 (15 HSPs)
chr8 (270-331)||(5020097-5020158)
chr8 (253-329)||(5217805-5217880)
chr8 (270-306)||(20169788-20169824)
chr8 (269-329)||(38956883-38956943)
chr8 (270-324)||(36819733-36819788)
chr8 (270-329)||(45368770-45368829)
chr8 (277-326)||(33636725-33636774)
chr8 (270-329)||(31206310-31206369)
chr8 (270-324)||(7044383-7044437)
chr8 (270-324)||(39932729-39932783)
chr8 (290-331)||(42022638-42022679)
chr8 (270-326)||(15352120-15352176)
chr8 (282-329)||(22601011-22601059)
chr8 (273-329)||(27633505-27633560)
chr8 (290-326)||(35592459-35592495)
[»] chr1 (19 HSPs)
chr1 (270-319)||(31745464-31745513)
chr1 (270-326)||(4039652-4039708)
chr1 (270-326)||(5115656-5115712)
chr1 (270-329)||(25095609-25095668)
chr1 (282-329)||(50974621-50974668)
chr1 (270-324)||(45753450-45753504)
chr1 (270-326)||(34445669-34445725)
chr1 (277-324)||(28171534-28171581)
chr1 (290-329)||(31652642-31652681)
chr1 (270-325)||(45584539-45584594)
chr1 (270-331)||(12636353-12636414)
chr1 (290-326)||(40203128-40203164)
chr1 (270-318)||(40377042-40377090)
chr1 (282-325)||(7549855-7549898)
chr1 (270-324)||(5597716-5597770)
chr1 (271-329)||(46895933-46895991)
chr1 (282-326)||(5787492-5787536)
chr1 (262-318)||(28672346-28672402)
chr1 (269-317)||(44719180-44719228)
[»] chr2 (18 HSPs)
chr2 (270-318)||(8773731-8773779)
chr2 (270-318)||(8789856-8789904)
chr2 (253-329)||(4238372-4238449)
chr2 (277-326)||(6761776-6761825)
chr2 (253-329)||(44941128-44941205)
chr2 (270-318)||(2393098-2393146)
chr2 (258-329)||(18053064-18053136)
chr2 (270-324)||(13442631-13442685)
chr2 (270-318)||(433568-433616)
chr2 (264-316)||(11742165-11742217)
chr2 (270-318)||(45212057-45212105)
chr2 (270-329)||(20683044-20683103)
chr2 (277-324)||(33275945-33275992)
chr2 (270-316)||(8898861-8898907)
chr2 (277-318)||(3199546-3199587)
chr2 (269-326)||(42945064-42945121)
chr2 (278-318)||(1070568-1070608)
chr2 (282-326)||(12075572-12075616)
[»] chr7 (11 HSPs)
chr7 (282-329)||(38452183-38452230)
chr7 (270-331)||(8170031-8170092)
chr7 (270-329)||(47507610-47507669)
chr7 (270-306)||(44391498-44391534)
chr7 (269-307)||(2964048-2964086)
chr7 (276-318)||(48137789-48137831)
chr7 (282-319)||(5248107-5248144)
chr7 (270-329)||(2741173-2741232)
chr7 (290-331)||(35567134-35567175)
chr7 (270-318)||(42493708-42493757)
chr7 (270-326)||(37352461-37352517)
[»] chr5 (22 HSPs)
chr5 (269-331)||(21582371-21582433)
chr5 (270-326)||(37976448-37976504)
chr5 (270-329)||(8247067-8247126)
chr5 (270-329)||(28793335-28793394)
chr5 (270-318)||(14042463-14042511)
chr5 (262-325)||(1354399-1354462)
chr5 (270-329)||(10051730-10051789)
chr5 (270-317)||(22871920-22871967)
chr5 (270-329)||(35395188-35395247)
chr5 (270-324)||(8761927-8761981)
chr5 (277-326)||(26663642-26663691)
chr5 (277-326)||(26935237-26935286)
chr5 (281-325)||(14475051-14475095)
chr5 (292-324)||(24241064-24241096)
chr5 (277-325)||(24241208-24241256)
chr5 (270-325)||(31889615-31889671)
chr5 (282-329)||(3263759-3263806)
chr5 (282-328)||(4725892-4725937)
chr5 (277-326)||(27016678-27016727)
chr5 (295-331)||(142400-142436)
chr5 (270-326)||(1031717-1031773)
chr5 (282-318)||(12933345-12933381)
[»] chr3 (18 HSPs)
chr3 (270-324)||(43749526-43749580)
chr3 (270-318)||(38388712-38388760)
chr3 (270-318)||(779733-779781)
chr3 (270-318)||(1680516-1680564)
chr3 (269-329)||(4033030-4033090)
chr3 (270-329)||(18399206-18399266)
chr3 (277-329)||(38704997-38705049)
chr3 (281-329)||(53433233-53433281)
chr3 (277-325)||(54912049-54912097)
chr3 (270-331)||(17753602-17753665)
chr3 (270-331)||(19054922-19054985)
chr3 (277-324)||(30464009-30464056)
chr3 (282-324)||(11404718-11404760)
chr3 (287-324)||(19898154-19898191)
chr3 (270-319)||(34758929-34758978)
chr3 (283-324)||(37775370-37775411)
chr3 (261-324)||(2831537-2831601)
chr3 (270-325)||(25548249-25548305)
[»] chr6 (6 HSPs)
chr6 (270-318)||(16442080-16442128)
chr6 (269-329)||(7465476-7465536)
chr6 (282-324)||(12307837-12307879)
chr6 (270-326)||(6048320-6048376)
chr6 (270-329)||(8176326-8176385)
chr6 (290-324)||(24616292-24616326)
[»] scaffold0246 (1 HSPs)
scaffold0246 (270-331)||(18154-18215)


Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 109 - 473
Target Start/End: Original strand, 28165233 - 28165592
Alignment:
Q  109 actcaatatcactggaacacttaactacatgcataatcttcataaacccaccaatgagaatgagaaagcgagaccaccggttgagtattattttgtgaaa 208  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28165233 actcaatatcactggaatacttaactacatgcatgatcttcataaacccaccaatgagaatgagaaagcgagaccaccggttgagtactattttgtgaaa 28165332  T
Q  209 aacaaatgatatttgtacactcataatttttaaagggtcttgtt---gagtgtcc-tgagacact-tttaaagattctaaaagaataaattattttataa 303  Q
    ||||||||||||||||||||||||||       |||||||||||   ||||| || ||||| ||| ||||||||||||||||||| ||||||||||||||    
T  28165333 aacaaatgatatttgtacactcataa-------agggtcttgttaacgagtgcccctgagatactctttaaagattctaaaagaagaaattattttataa 28165425  T
Q  304 aaaag-tcaaatatttcaatttccgataccatttaaaatccttaactaatgtctcaggaacattggttaacatttcccattttttaatattcattgaaca 402  Q
    ||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||| ||||||||||||||||||||||    
T  28165426 aaaaaatcaaatatttcaatttccgataccatttaaaatccttaactagtgtctcagggacattgattaacatttcctattttttaatattcattgaaca 28165525  T
Q  403 catcattagctctttatttttctattcttactacatcaagtctatcatagatctctctatttcttctctct 473  Q
    ||||||||||||||||||||||||||| |||||    |||| |||||| |||||||||||||||| |||||    
T  28165526 catcattagctctttatttttctattcctacta----aagtatatcatcgatctctctatttcttttctct 28165592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 262 - 331
Target Start/End: Complemental strand, 9802730 - 9802661
Alignment:
Q  262 gagacacttttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttccgatac 331  Q
    |||||||| || || |||||||||||| |||||||||||||||||||||||||||||  |||||||||||    
T  9802730 gagacactctttaaaattctaaaagaaaaaattattttataaaaaagtcaaatattttgatttccgatac 9802661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 269 - 326
Target Start/End: Complemental strand, 12103947 - 12103890
Alignment:
Q  269 ttttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttcc 326  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||| ||| ||||||    
T  12103947 ttttaaggattctaaaagaataaattatttcataaaaaagtcaaataattcgatttcc 12103890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 282 - 329
Target Start/End: Complemental strand, 31871149 - 31871102
Alignment:
Q  282 aaaagaataaattattttataaaaaagtcaaatatttcaatttccgat 329  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||    
T  31871149 aaaagaagaaattattttataaaaaagtaaaatatttcaatttccgat 31871102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 325
Target Start/End: Complemental strand, 39727659 - 39727605
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttc 325  Q
    ||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  39727659 tttaaggattctaaaagaataaattattctat-aaaaagtcaaatatttcaatttc 39727605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 329
Target Start/End: Complemental strand, 44647987 - 44647928
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttccgat 329  Q
    ||||||||||| ||||||| ||| |||||||||| ||| |||||||||||||||||||||    
T  44647987 tttaaagattccaaaagaagaaactattttataataaaatcaaatatttcaatttccgat 44647928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 282 - 329
Target Start/End: Original strand, 53919880 - 53919927
Alignment:
Q  282 aaaagaataaattattttataaaaaagtcaaatatttcaatttccgat 329  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||    
T  53919880 aaaagaataaattattctataaaaaagtcaaaaatttcaatttccgat 53919927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 28165124 - 28165166
Alignment:
Q  1 attctaagaaaatggtttattttatataggactaaaagttaaa 43  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  28165124 attctaagaaaatggtttattttatataggattaaaagttaaa 28165166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 282 - 331
Target Start/End: Original strand, 33982437 - 33982486
Alignment:
Q  282 aaaagaataaattattttataaaaaagtcaaatatttcaatttccgatac 331  Q
    ||||||| |||||||||||||||||||| ||||||||| |||||||||||    
T  33982437 aaaagaaaaaattattttataaaaaagttaaatatttcgatttccgatac 33982486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 270 - 331
Target Start/End: Complemental strand, 40480276 - 40480215
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttccgatac 331  Q
    ||||| ||| ||||||||| ||||||| | |||||||||||||||||||||||| |||||||    
T  40480276 tttaaggatgctaaaagaagaaattatgtcataaaaaagtcaaatatttcaattcccgatac 40480215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 25196136 - 25196184
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatattt 318  Q
    ||||| ||||||||||||| |||||| ||||||||||||||||||||||    
T  25196136 tttaaggattctaaaagaaaaaattaatttataaaaaagtcaaatattt 25196184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 270 - 324
Target Start/End: Original strand, 34235912 - 34235967
Alignment:
Q  270 tttaaagattctaaaagaataaattattttat-aaaaaagtcaaatatttcaattt 324  Q
    |||||| ||| ||||||||||||||||||||| |||||||||||| ||||||||||    
T  34235912 tttaaacattttaaaagaataaattattttataaaaaaagtcaaaaatttcaattt 34235967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 318
Target Start/End: Original strand, 51230092 - 51230145
Alignment:
Q  265 acacttttaaagattctaaaagaataaattattttataaaaaagtcaaatattt 318  Q
    |||||||||||||||  |||| || ||||||||||||| |||||||||||||||    
T  51230092 acacttttaaagattacaaaataagaaattattttatataaaagtcaaatattt 51230145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 325
Target Start/End: Complemental strand, 24395303 - 24395247
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaa-gtcaaatatttcaatttc 325  Q
    ||||| ||||||||||||| |||||| ||||||||||| |||||||||||| |||||    
T  24395303 tttaaggattctaaaagaagaaattaatttataaaaaaggtcaaatatttcgatttc 24395247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 329
Target Start/End: Complemental strand, 49446700 - 49446640
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaa-gtcaaatatttcaatttccgat 329  Q
    ||||| ||||| ||||||| || ||||||||||||||| |||||||||||| |||||||||    
T  49446700 tttaaggattccaaaagaagaagttattttataaaaaaagtcaaatatttcgatttccgat 49446640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 326
Target Start/End: Original strand, 50115059 - 50115103
Alignment:
Q  282 aaaagaataaattattttataaaaaagtcaaatatttcaatttcc 326  Q
    ||||||| |||||||||||||||||||||||| ||||| ||||||    
T  50115059 aaaagaagaaattattttataaaaaagtcaaagatttcgatttcc 50115103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 329
Target Start/End: Complemental strand, 44646619 - 44646572
Alignment:
Q  282 aaaagaataaattattttataaaaaagtcaaatatttcaatttccgat 329  Q
    ||||||| ||| |||||||||| ||||||||||||||| |||||||||    
T  44646619 aaaagaagaaactattttataataaagtcaaatatttcgatttccgat 44646572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 320
Target Start/End: Complemental strand, 27707003 - 27706953
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttca 320  Q
    ||||| |||||||||| || |||| ||||||||| ||||||||||||||||    
T  27707003 tttaatgattctaaaataagaaatcattttataagaaagtcaaatatttca 27706953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 331
Target Start/End: Original strand, 42197042 - 42197096
Alignment:
Q  277 attctaaaagaataaattattttataaaaaagtcaaatatttcaatttccgatac 331  Q
    |||||||||||| |||||||||||| ||||| ||||||||||  |||| ||||||    
T  42197042 attctaaaagaagaaattattttattaaaaaatcaaatattttgattttcgatac 42197096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 281 - 329
Target Start/End: Complemental strand, 1696283 - 1696235
Alignment:
Q  281 taaaagaataaattattttataaaaaagtcaaatatttcaatttccgat 329  Q
    |||||||| | ||||||  ||||||||| ||||||||||||||||||||    
T  1696283 taaaagaagatattattccataaaaaagacaaatatttcaatttccgat 1696235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 27346298 - 27346346
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatattt 318  Q
    ||||| |||||||||| || || ||||||||||||||||||||| ||||    
T  27346298 tttaaggattctaaaaaaagaatttattttataaaaaagtcaaagattt 27346346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 270 - 326
Target Start/End: Original strand, 54543570 - 54543626
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttcc 326  Q
    |||||| |||||||||| | ||||||||| |||||||||  |||| |||||||||||    
T  54543570 tttaaatattctaaaaggagaaattatttcataaaaaagcaaaatgtttcaatttcc 54543626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 270 - 331
Target Start/End: Complemental strand, 5020158 - 5020097
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttccgatac 331  Q
    ||||| ||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||    
T  5020158 tttaaggattctaaaagaagaaataattttataaaaaagtcaaagatttcaatttccgatac 5020097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 5217880 - 5217805
Alignment:
Q  253 gagtgtcctgagacact-tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttccgat 329  Q
    |||||||||| |||||| ||||| ||||| ||||  |||||| ||||||||||||||||||||||||| |||||||||    
T  5217880 gagtgtcctgggacactctttaaggattcaaaaa--ataaatgattttataaaaaagtcaaatatttcgatttccgat 5217805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 306
Target Start/End: Complemental strand, 20169824 - 20169788
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaa 306  Q
    |||||||||||||||||||||||||||||||||||||    
T  20169824 tttaaagattctaaaagaataaattattttataaaaa 20169788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 329
Target Start/End: Original strand, 38956883 - 38956943
Alignment:
Q  269 ttttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttccgat 329  Q
    |||||| ||||||||||||   ||||| ||||||||||||||||||||||| |||||||||    
T  38956883 ttttaaggattctaaaagatgtaattaatttataaaaaagtcaaatatttcgatttccgat 38956943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 270 - 324
Target Start/End: Complemental strand, 36819788 - 36819733
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataa-aaaagtcaaatatttcaattt 324  Q
    ||||||||||||||||||| |||||||||||||| |||| |||||||||| |||||    
T  36819788 tttaaagattctaaaagaaaaaattattttataaaaaaaatcaaatattttaattt 36819733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 270 - 329
Target Start/End: Complemental strand, 45368829 - 45368770
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttccgat 329  Q
    ||||| ||||| |||| || |||||||||||||||||||| |||||||||||||| ||||    
T  45368829 tttaaggattccaaaaaaagaaattattttataaaaaagttaaatatttcaattttcgat 45368770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 277 - 326
Target Start/End: Original strand, 33636725 - 33636774
Alignment:
Q  277 attctaaaagaataaattattttataaaaaagtcaaatatttcaatttcc 326  Q
    |||||||||| | ||||||||| ||||||||||||||| |||||||||||    
T  33636725 attctaaaaggagaaattatttcataaaaaagtcaaatgtttcaatttcc 33636774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 329
Target Start/End: Original strand, 31206310 - 31206369
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttccgat 329  Q
    ||||| ||||| ||||| | |||||||||||||||||| ||||||||||  |||||||||    
T  31206310 tttaaggattcaaaaagtagaaattattttataaaaaaatcaaatattttgatttccgat 31206369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 324
Target Start/End: Complemental strand, 7044437 - 7044383
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaattt 324  Q
    ||||| ||||||||||||| |||||| ||||| ||||||||||| ||||| ||||    
T  7044437 tttaaggattctaaaagaagaaattaatttattaaaaagtcaaacatttcgattt 7044383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 324
Target Start/End: Complemental strand, 39932783 - 39932729
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaattt 324  Q
    |||||| ||||||||||||  ||| |||  |||||||||||||||||||||||||    
T  39932783 tttaaacattctaaaagaagtaataattccataaaaaagtcaaatatttcaattt 39932729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 42022679 - 42022638
Alignment:
Q  290 aaattattttataaaaaagtcaaatatttcaatttccgatac 331  Q
    |||||||||| ||||||||||||||| |||||||||| ||||    
T  42022679 aaattattttttaaaaaagtcaaatagttcaatttccaatac 42022638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 270 - 326
Target Start/End: Complemental strand, 15352176 - 15352120
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttcc 326  Q
    |||||| ||||||||  || |||||||| | ||||||||||||||| ||||||||||    
T  15352176 tttaaacattctaaattaaaaaattattctgtaaaaaagtcaaatagttcaatttcc 15352120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 329
Target Start/End: Original strand, 22601011 - 22601059
Alignment:
Q  282 aaaagaataaattattttat-aaaaaagtcaaatatttcaatttccgat 329  Q
    ||||||| |||||||||||| |||||||||||||| |||||||| ||||    
T  22601011 aaaagaagaaattattttattaaaaaagtcaaatacttcaatttacgat 22601059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 329
Target Start/End: Original strand, 27633505 - 27633560
Alignment:
Q  273 aaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttccgat 329  Q
    |||||||  ||||||| ||||||||  |||||||| |||||||||||||||||||||    
T  27633505 aaagatttcaaaagaa-aaattattcaataaaaaaatcaaatatttcaatttccgat 27633560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 326
Target Start/End: Original strand, 35592459 - 35592495
Alignment:
Q  290 aaattattttataaaaaagtcaaatatttcaatttcc 326  Q
    |||||||||  ||||||||||||||||||||||||||    
T  35592459 aaattatttcgtaaaaaagtcaaatatttcaatttcc 35592495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 270 - 319
Target Start/End: Complemental strand, 31745513 - 31745464
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttc 319  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  31745513 tttaaagattctaaaagaataaattattttataataaagtcaaatatttc 31745464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 270 - 326
Target Start/End: Complemental strand, 4039708 - 4039652
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttcc 326  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  4039708 tttaaggattccaaaagaataaattattttataaaaaagtcaaatatttcgatttcc 4039652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 270 - 326
Target Start/End: Complemental strand, 5115712 - 5115656
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttcc 326  Q
    ||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  5115712 tttaaggattctaaaagaataaattatgttataaaaaagttaaatatttcaatttcc 5115656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 270 - 329
Target Start/End: Original strand, 25095609 - 25095668
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttccgat 329  Q
    ||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||    
T  25095609 tttaaggattctaaaagaagaaattatttcataaaaaagtcaaatatttcaattttcgat 25095668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 282 - 329
Target Start/End: Complemental strand, 50974668 - 50974621
Alignment:
Q  282 aaaagaataaattattttataaaaaagtcaaatatttcaatttccgat 329  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  50974668 aaaagaaaaaattattttataaaaaagtcaaatatttcaattttcgat 50974621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 270 - 324
Target Start/End: Original strand, 45753450 - 45753504
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaattt 324  Q
    ||||||||||||||||||| ||||||||| | ||||| |||||||||||||||||    
T  45753450 tttaaagattctaaaagaagaaattatttcagaaaaatgtcaaatatttcaattt 45753504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 326
Target Start/End: Original strand, 34445669 - 34445725
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttcc 326  Q
    ||||| ||||| ||||||| |||||| ||||||||||||||||||||||| ||||||    
T  34445669 tttaaggattccaaaagaagaaattaatttataaaaaagtcaaatatttcgatttcc 34445725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 277 - 324
Target Start/End: Complemental strand, 28171581 - 28171534
Alignment:
Q  277 attctaaaagaataaattattttataaaaaagtcaaatatttcaattt 324  Q
    |||| ||||||| |||||||||||||||||||| ||||||||||||||    
T  28171581 attcaaaaagaaaaaattattttataaaaaagttaaatatttcaattt 28171534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 290 - 329
Target Start/End: Original strand, 31652642 - 31652681
Alignment:
Q  290 aaattattttataaaaaagtcaaatatttcaatttccgat 329  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  31652642 aaattattttataaaaaagtcaaatattttaatttccgat 31652681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 270 - 325
Target Start/End: Original strand, 45584539 - 45584594
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttc 325  Q
    ||||| ||||| ||||||| |||||||||||||||||||| |||||||| ||||||    
T  45584539 tttaaggattccaaaagaagaaattattttataaaaaagttaaatattttaatttc 45584594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 270 - 331
Target Start/End: Complemental strand, 12636414 - 12636353
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttccgatac 331  Q
    ||||| ||||| |||||||||||| ||||||| |||||||||| |||||| |||||| ||||    
T  12636414 tttaaggattccaaaagaataaataattttattaaaaagtcaagtatttcgatttcctatac 12636353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 326
Target Start/End: Complemental strand, 40203164 - 40203128
Alignment:
Q  290 aaattattttataaaaaagtcaaatatttcaatttcc 326  Q
    ||||||||| |||||||||||||||||||||||||||    
T  40203164 aaattatttcataaaaaagtcaaatatttcaatttcc 40203128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 40377042 - 40377090
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatattt 318  Q
    ||||| ||||| ||||||| |||| ||||||||||||||||||||||||    
T  40377042 tttaaggattccaaaagaagaaataattttataaaaaagtcaaatattt 40377090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 325
Target Start/End: Original strand, 7549855 - 7549898
Alignment:
Q  282 aaaagaataaattattttataaaaaagtcaaatatttcaatttc 325  Q
    ||||||| |||| ||||||||||||||||||||||||| |||||    
T  7549855 aaaagaagaaataattttataaaaaagtcaaatatttcgatttc 7549898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 324
Target Start/End: Original strand, 5597716 - 5597770
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaattt 324  Q
    |||||| ||| |||||||| |||||||| ||||||||||| |||||||| |||||    
T  5597716 tttaaatattttaaaagaagaaattattctataaaaaagttaaatattttaattt 5597770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 329
Target Start/End: Original strand, 46895933 - 46895991
Alignment:
Q  271 ttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttccgat 329  Q
    ||||||||||||||  || |||||||||  | |||||||| ||||||||||||||||||    
T  46895933 ttaaagattctaaattaagaaattatttattgaaaaagtctaatatttcaatttccgat 46895991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 326
Target Start/End: Complemental strand, 5787536 - 5787492
Alignment:
Q  282 aaaagaataaattattttataaaaaagtcaaatatttcaatttcc 326  Q
    ||||||| ||| |||||||||||| ||| ||||||||||||||||    
T  5787536 aaaagaagaaaatattttataaaatagttaaatatttcaatttcc 5787492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 28672402 - 28672346
Alignment:
Q  262 gagacacttttaaagattctaaaagaataaattattttataaaaaagtcaaatattt 318  Q
    |||||||| ||||  ||||||||| ||  ||||||||| ||||||||||||||||||    
T  28672402 gagacactcttaagcattctaaaataaacaattattttttaaaaaagtcaaatattt 28672346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 317
Target Start/End: Original strand, 44719180 - 44719228
Alignment:
Q  269 ttttaaagattctaaaagaataaattattttataaaaaagtcaaatatt 317  Q
    |||||| ||||| |||| |||| |||||||||||||||||| |||||||    
T  44719180 ttttaaggattccaaaaaaatatattattttataaaaaagttaaatatt 44719228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 8773779 - 8773731
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatattt 318  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8773779 tttaaagattctaaaagaagaaattattttataaaaaagtcaaatattt 8773731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 8789856 - 8789904
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatattt 318  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  8789856 tttaaagattctaaaagaagaaattattttataaaaaagttaaatattt 8789904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 4238449 - 4238372
Alignment:
Q  253 gagtgtcctgagacact-tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttccgat 329  Q
    |||||||| | |||||| ||||| ||||| ||||||| |||||||||||||||||| ||||||||||| |||| ||||    
T  4238449 gagtgtcccgggacactctttaaggattcaaaaagaagaaattattttataaaaaaatcaaatatttcgattttcgat 4238372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 277 - 326
Target Start/End: Complemental strand, 6761825 - 6761776
Alignment:
Q  277 attctaaaagaataaattattttataaaaaagtcaaatatttcaatttcc 326  Q
    |||| |||||||||||| ||| ||||||||||||||||||||||||||||    
T  6761825 attccaaaagaataaatcattctataaaaaagtcaaatatttcaatttcc 6761776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 44941205 - 44941128
Alignment:
Q  253 gagtgtcctgagacact-tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttccgat 329  Q
    ||||| ||||||||||| ||||| ||||||||||||| ||| ||| |||||||||||| ||| ||||| |||||||||    
T  44941205 gagtgccctgagacactctttaaggattctaaaagaagaaagtatgttataaaaaagttaaagatttcgatttccgat 44941128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 2393146 - 2393098
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatattt 318  Q
    ||||| ||||||||||||| |||||| ||||||||||||||||||||||    
T  2393146 tttaaggattctaaaagaagaaattaatttataaaaaagtcaaatattt 2393098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 329
Target Start/End: Complemental strand, 18053136 - 18053064
Alignment:
Q  258 tcctgagacact-tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttccgat 329  Q
    ||||| |||||| ||||| ||||  ||||||| |||||||||||||||||||||||||||||  |||||||||    
T  18053136 tcctgggacactctttaaggatttcaaaagaagaaattattttataaaaaagtcaaatattttgatttccgat 18053064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 270 - 324
Target Start/End: Complemental strand, 13442685 - 13442631
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataa-aaaagtcaaatatttcaattt 324  Q
    ||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||    
T  13442685 tttaaagattc-aaaagaataaattattttataaaaaaagttaaatatttcaattt 13442631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 433616 - 433568
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatattt 318  Q
    ||||| ||||| |||||||||||||| ||||||||||||| ||||||||    
T  433616 tttaaggattccaaaagaataaattaatttataaaaaagttaaatattt 433568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 11742217 - 11742165
Alignment:
Q  264 gacacttttaaagattctaaaagaataaattattttataaaaaagtcaaatat 316  Q
    ||||||||||| |||| ||||| || |||||||| ||||||||||||||||||    
T  11742217 gacacttttaaggattttaaaaaaagaaattattctataaaaaagtcaaatat 11742165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 45212057 - 45212105
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatattt 318  Q
    ||||| ||||||||||  |||||||||||||||||||| ||||||||||    
T  45212057 tttaaggattctaaaaagataaattattttataaaaaaatcaaatattt 45212105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 329
Target Start/End: Complemental strand, 20683103 - 20683044
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttccgat 329  Q
    ||||| ||||| ||||||| |||  ||||||||||||| ||||||||||| |||||||||    
T  20683103 tttaaggattccaaaagaagaaaagattttataaaaaaatcaaatatttcgatttccgat 20683044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 324
Target Start/End: Complemental strand, 33275992 - 33275945
Alignment:
Q  277 attctaaaagaataaattattttataaaaaagtcaaatatttcaattt 324  Q
    ||||||||| || |||||||||| ||||||||| ||||||||||||||    
T  33275992 attctaaaacaagaaattattttttaaaaaagttaaatatttcaattt 33275945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 316
Target Start/End: Complemental strand, 8898907 - 8898861
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatat 316  Q
    ||||| |||||||||| || |||||||||||||| ||||||||||||    
T  8898907 tttaatgattctaaaataagaaattattttataataaagtcaaatat 8898861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 318
Target Start/End: Complemental strand, 3199587 - 3199546
Alignment:
Q  277 attctaaaagaataaattattttataaaaaagtcaaatattt 318  Q
    ||||||||| || |||||||||||||||||| ||||||||||    
T  3199587 attctaaaataagaaattattttataaaaaattcaaatattt 3199546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 326
Target Start/End: Complemental strand, 42945121 - 42945064
Alignment:
Q  269 ttttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttcc 326  Q
    |||||| |||| |||||||| | |||||||||| ||||| ||||||||||| ||||||    
T  42945121 ttttaaggattttaaaagaaaacattattttattaaaaactcaaatatttcgatttcc 42945064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 1070568 - 1070608
Alignment:
Q  278 ttctaaaagaataaattattttataaaaaagtcaaatattt 318  Q
    ||||||||||||| |||||||||||| ||||| ||||||||    
T  1070568 ttctaaaagaatatattattttataataaagtaaaatattt 1070608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 326
Target Start/End: Complemental strand, 12075616 - 12075572
Alignment:
Q  282 aaaagaataaattattttataaaaaagtcaaatatttcaatttcc 326  Q
    ||||||| ||| ||||| ||| |||||||||||||||||||||||    
T  12075616 aaaagaagaaactatttcatacaaaagtcaaatatttcaatttcc 12075572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 282 - 329
Target Start/End: Original strand, 38452183 - 38452230
Alignment:
Q  282 aaaagaataaattattttataaaaaagtcaaatatttcaatttccgat 329  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  38452183 aaaagaagaaattattttataaaaaagtcaaatatttcaatttccgat 38452230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 270 - 331
Target Start/End: Original strand, 8170031 - 8170092
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttccgatac 331  Q
    ||||| ||||| ||||||| |||||||||||||||||||||||||||||  |||||||||||    
T  8170031 tttaaggattccaaaagaagaaattattttataaaaaagtcaaatattttgatttccgatac 8170092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 329
Target Start/End: Original strand, 47507610 - 47507669
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttccgat 329  Q
    ||||| ||||||||||||| |||| ||||||||||||| ||||| |||||||||||||||    
T  47507610 tttaaggattctaaaagaagaaataattttataaaaaaatcaaagatttcaatttccgat 47507669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 306
Target Start/End: Complemental strand, 44391534 - 44391498
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaa 306  Q
    |||||||||||||||||||||||||||||||||||||    
T  44391534 tttaaagattctaaaagaataaattattttataaaaa 44391498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 307
Target Start/End: Original strand, 2964048 - 2964086
Alignment:
Q  269 ttttaaagattctaaaagaataaattattttataaaaaa 307  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  2964048 ttttaaagattctaaaagaagaaattattttataaaaaa 2964086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 318
Target Start/End: Original strand, 48137789 - 48137831
Alignment:
Q  276 gattctaaaagaataaattattttataaaaaagtcaaatattt 318  Q
    ||||| ||||||| |||||||||||||||||||||||||||||    
T  48137789 gattccaaaagaagaaattattttataaaaaagtcaaatattt 48137831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 282 - 319
Target Start/End: Original strand, 5248107 - 5248144
Alignment:
Q  282 aaaagaataaattattttataaaaaagtcaaatatttc 319  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  5248107 aaaagaagaaattattttataaaaaagtcaaatatttc 5248144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 329
Target Start/End: Original strand, 2741173 - 2741232
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttccgat 329  Q
    ||||| |||| |||||||| |||||||||||| ||||| ||||||||||  |||||||||    
T  2741173 tttaaggattttaaaagaaaaaattattttattaaaaaatcaaatattttgatttccgat 2741232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 331
Target Start/End: Original strand, 35567134 - 35567175
Alignment:
Q  290 aaattattttataaaaaagtcaaatatttcaatttccgatac 331  Q
    |||||||||| |||||||||||||||||| ||||||| ||||    
T  35567134 aaattattttttaaaaaagtcaaatattttaatttccaatac 35567175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 42493708 - 42493757
Alignment:
Q  270 tttaaagattctaaaagaataaattatttt-ataaaaaagtcaaatattt 318  Q
    ||||| ||||| ||||||| |||||||||| |||||||||||||||||||    
T  42493708 tttaaggattccaaaagaagaaattattttgataaaaaagtcaaatattt 42493757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 270 - 326
Target Start/End: Complemental strand, 37352517 - 37352461
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttcc 326  Q
    ||||| ||||| |||| || ||||||||  || ||||||||||||||||||||||||    
T  37352517 tttaaggattcaaaaacaagaaattattccattaaaaagtcaaatatttcaatttcc 37352461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 269 - 331
Target Start/End: Original strand, 21582371 - 21582433
Alignment:
Q  269 ttttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttccgatac 331  Q
    |||||| ||||| |||||||||||||||||||||||| ||||||||||||| ||||| |||||    
T  21582371 ttttaaggattccaaaagaataaattattttataaaatagtcaaatatttcgatttctgatac 21582433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 270 - 326
Target Start/End: Original strand, 37976448 - 37976504
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttcc 326  Q
    |||||| |||||||||||| ||||||||| |||||||| ||||||||||||||||||    
T  37976448 tttaaacattctaaaagaagaaattatttcataaaaaaatcaaatatttcaatttcc 37976504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 329
Target Start/End: Original strand, 8247067 - 8247126
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttccgat 329  Q
    ||||| ||||| ||||||| |||| ||||||||||||||||||||||||| |||||||||    
T  8247067 tttaaggattccaaaagaagaaataattttataaaaaagtcaaatatttcgatttccgat 8247126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 329
Target Start/End: Original strand, 28793335 - 28793394
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttccgat 329  Q
    ||||| ||||| ||||||| |||| ||||||||||||||||||||||||| |||||||||    
T  28793335 tttaaggattccaaaagaagaaatgattttataaaaaagtcaaatatttcgatttccgat 28793394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 14042463 - 14042511
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatattt 318  Q
    |||||||||||||||| ||||||||||| | ||||||||||||||||||    
T  14042463 tttaaagattctaaaataataaattattatttaaaaaagtcaaatattt 14042511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 262 - 325
Target Start/End: Complemental strand, 1354462 - 1354399
Alignment:
Q  262 gagacacttttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttc 325  Q
    |||||||| ||||  ||||||||| || |||||||||||||||||||| ||||||||| |||||    
T  1354462 gagacactcttaagaattctaaaaaaagaaattattttataaaaaagttaaatatttcgatttc 1354399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 270 - 329
Target Start/End: Original strand, 10051730 - 10051789
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttccgat 329  Q
    ||||| |||| |||||||| |||| ||||||||||||||||||||||||  |||||||||    
T  10051730 tttaaggattttaaaagaagaaataattttataaaaaagtcaaatatttatatttccgat 10051789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 270 - 317
Target Start/End: Original strand, 22871920 - 22871967
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatatt 317  Q
    ||||| ||||||||||||| ||| ||||||||||||||||||||||||    
T  22871920 tttaaggattctaaaagaagaaaatattttataaaaaagtcaaatatt 22871967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 270 - 329
Target Start/End: Original strand, 35395188 - 35395247
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttccgat 329  Q
    ||||| ||||| ||||||| ||| ||||||||||||||||||||||||| ||||| ||||    
T  35395188 tttaaggattccaaaagaagaaactattttataaaaaagtcaaatattttaattttcgat 35395247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 324
Target Start/End: Original strand, 8761927 - 8761981
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaattt 324  Q
    ||||| |||||||||| || |||||||| ||||||||||| ||||||||||||||    
T  8761927 tttaaggattctaaaaaaagaaattattctataaaaaagttaaatatttcaattt 8761981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 277 - 326
Target Start/End: Original strand, 26663642 - 26663691
Alignment:
Q  277 attctaaaagaataaattattttataaaaaagtcaaatatttcaatttcc 326  Q
    ||||||||| || |||||||||| ||||||||||||||||||| ||||||    
T  26663642 attctaaaataagaaattattttttaaaaaagtcaaatatttcgatttcc 26663691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 277 - 326
Target Start/End: Original strand, 26935237 - 26935286
Alignment:
Q  277 attctaaaagaataaattattttataaaaaagtcaaatatttcaatttcc 326  Q
    ||||||||| || |||||||||| ||||||||||||||||||| ||||||    
T  26935237 attctaaaataagaaattattttttaaaaaagtcaaatatttcgatttcc 26935286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 325
Target Start/End: Complemental strand, 14475095 - 14475051
Alignment:
Q  281 taaaagaataaattattttataaaaaagtcaaatatttcaatttc 325  Q
    |||||||| |||||||| |||||||| ||||||||||||||||||    
T  14475095 taaaagaagaaattattctataaaaatgtcaaatatttcaatttc 14475051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 324
Target Start/End: Complemental strand, 24241096 - 24241064
Alignment:
Q  292 attattttataaaaaagtcaaatatttcaattt 324  Q
    |||||||||||||||||||||||||||||||||    
T  24241096 attattttataaaaaagtcaaatatttcaattt 24241064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 325
Target Start/End: Complemental strand, 24241256 - 24241208
Alignment:
Q  277 attctaaaagaataaattattttataaaaaagtcaaatatttcaatttc 325  Q
    |||||||||||| |||||||||||  ||||||||||||||||| |||||    
T  24241256 attctaaaagaaaaaattattttaataaaaagtcaaatatttcgatttc 24241208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 325
Target Start/End: Original strand, 31889615 - 31889671
Alignment:
Q  270 tttaaagattctaaaagaataaattattttat-aaaaaagtcaaatatttcaatttc 325  Q
    ||||| ||||||||||||| |||||| ||||| |||||||| |||||||||||||||    
T  31889615 tttaacgattctaaaagaagaaattaatttataaaaaaagtaaaatatttcaatttc 31889671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 329
Target Start/End: Original strand, 3263759 - 3263806
Alignment:
Q  282 aaaagaataaattattttataaaaaagtcaaatatttcaatttccgat 329  Q
    ||||||| |||| ||||||||||||||||||| ||||| |||||||||    
T  3263759 aaaagaagaaatcattttataaaaaagtcaaagatttcgatttccgat 3263806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 328
Target Start/End: Complemental strand, 4725937 - 4725892
Alignment:
Q  282 aaaagaataaattattttataaaaaagtcaaatatttcaatttccga 328  Q
    ||||||||||||||||||||| |||||||||| ||||| ||||||||    
T  4725937 aaaagaataaattattttata-aaaagtcaaagatttcgatttccga 4725892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 326
Target Start/End: Original strand, 27016678 - 27016727
Alignment:
Q  277 attctaaaagaataaattattttataaaaaagtcaaatatttcaatttcc 326  Q
    |||| ||||||| ||||||||  |||||||||||||| ||||||||||||    
T  27016678 attccaaaagaagaaattattccataaaaaagtcaaaaatttcaatttcc 27016727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 295 - 331
Target Start/End: Complemental strand, 142436 - 142400
Alignment:
Q  295 attttataaaaaagtcaaatatttcaatttccgatac 331  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  142436 attttataaaaaaatcaaatatttcaatttctgatac 142400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 270 - 326
Target Start/End: Original strand, 1031717 - 1031773
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttcc 326  Q
    |||||| ||||||||| || |||| ||| |||||||||||| | |||||||||||||    
T  1031717 tttaaatattctaaaataagaaatcattatataaaaaagtccagtatttcaatttcc 1031773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 318
Target Start/End: Original strand, 12933345 - 12933381
Alignment:
Q  282 aaaagaataaattattttataaaaaagtcaaatattt 318  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  12933345 aaaataataaattattttataagaaagtcaaatattt 12933381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 270 - 324
Target Start/End: Complemental strand, 43749580 - 43749526
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaattt 324  Q
    ||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  43749580 tttaaggattctaaaagaataaattattctattaaaaagtcaaatatttcaattt 43749526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 38388712 - 38388760
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatattt 318  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  38388712 tttaaagattctaaaagaagaaattaatttataaaaaagtcaaatattt 38388760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 779781 - 779733
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatattt 318  Q
    |||||| ||||||||||||||||||||||||| ||||||| ||||||||    
T  779781 tttaaaaattctaaaagaataaattattttatgaaaaagttaaatattt 779733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 1680564 - 1680516
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatattt 318  Q
    ||||| ||||| |||||||||||||| ||||||||||||||||||||||    
T  1680564 tttaaggattcaaaaagaataaattaatttataaaaaagtcaaatattt 1680516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 329
Target Start/End: Original strand, 4033030 - 4033090
Alignment:
Q  269 ttttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttccgat 329  Q
    |||||| |||||||||| || |||||||||||||||||| ||||| ||||| |||||||||    
T  4033030 ttttaaggattctaaaaaaagaaattattttataaaaaaatcaaagatttcgatttccgat 4033090  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 329
Target Start/End: Complemental strand, 18399266 - 18399206
Alignment:
Q  270 tttaaagattctaaaagaataaattatttt-ataaaaaagtcaaatatttcaatttccgat 329  Q
    ||||| ||||| ||||||| |||| ||||| |||||||||||||||||||| |||||||||    
T  18399266 tttaaggattccaaaagaagaaataatttttataaaaaagtcaaatatttcgatttccgat 18399206  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 329
Target Start/End: Complemental strand, 38705049 - 38704997
Alignment:
Q  277 attctaaaagaataaattattttataaaaaagtcaaatatttcaatttccgat 329  Q
    |||| ||||||| ||||||||||||||||| |||||||||||  |||||||||    
T  38705049 attcaaaaagaaaaaattattttataaaaatgtcaaatattttgatttccgat 38704997  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 329
Target Start/End: Complemental strand, 53433281 - 53433233
Alignment:
Q  281 taaaagaataaattattttataaaaaagtcaaatatttcaatttccgat 329  Q
    |||||||| |||||||| |||||||||||||||||||| ||||| ||||    
T  53433281 taaaagaagaaattattctataaaaaagtcaaatattttaattttcgat 53433233  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 325
Target Start/End: Complemental strand, 54912097 - 54912049
Alignment:
Q  277 attctaaaagaataaattattttataaaaaagtcaaatatttcaatttc 325  Q
    |||| ||||||||||| |||||||||| ||||| |||||||||||||||    
T  54912097 attccaaaagaataaactattttataacaaagttaaatatttcaatttc 54912049  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 331
Target Start/End: Complemental strand, 17753665 - 17753602
Alignment:
Q  270 tttaaagattctaaaagaataaa-ttattttataaaaaag-tcaaatatttcaatttccgatac 331  Q
    |||||||||| ||||| |||||| |||||||||||||||  |||||||||||||||||| ||||    
T  17753665 tttaaagattttaaaaaaataaaattattttataaaaaacatcaaatatttcaatttccaatac 17753602  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 331
Target Start/End: Complemental strand, 19054985 - 19054922
Alignment:
Q  270 tttaaagattctaaaagaataaa-ttattttataaaaaag-tcaaatatttcaatttccgatac 331  Q
    |||||||||| ||||| |||||| |||||||||||||||  |||||||||||||||||| ||||    
T  19054985 tttaaagattttaaaaaaataaaattattttataaaaaacatcaaatatttcaatttccaatac 19054922  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 324
Target Start/End: Complemental strand, 30464056 - 30464009
Alignment:
Q  277 attctaaaagaataaattattttataaaaaagtcaaatatttcaattt 324  Q
    |||| ||||||| |||||||| ||||||||||||||| ||||||||||    
T  30464056 attccaaaagaagaaattattctataaaaaagtcaaacatttcaattt 30464009  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 324
Target Start/End: Original strand, 11404718 - 11404760
Alignment:
Q  282 aaaagaataaattattttataaaaaagtcaaatatttcaattt 324  Q
    |||| ||||||||||||||||||||||| |||||||| |||||    
T  11404718 aaaaaaataaattattttataaaaaagttaaatattttaattt 11404760  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 324
Target Start/End: Complemental strand, 19898191 - 19898154
Alignment:
Q  287 aataaattattttataaaaaagtcaaatatttcaattt 324  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  19898191 aataaattattttatataaaaatcaaatatttcaattt 19898154  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 319
Target Start/End: Original strand, 34758929 - 34758978
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttc 319  Q
    ||||| ||||| |||||||  ||||||||||||||||||| |||||||||    
T  34758929 tttaaggattcaaaaagaagtaattattttataaaaaagtgaaatatttc 34758978  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 37775411 - 37775370
Alignment:
Q  283 aaagaataaattattttataaaaaagtcaaatatttcaattt 324  Q
    |||||| |||||||||||||||||||| ||||||||| ||||    
T  37775411 aaagaagaaattattttataaaaaagttaaatatttcgattt 37775370  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 324
Target Start/End: Original strand, 2831537 - 2831601
Alignment:
Q  261 tgagacact-tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaattt 324  Q
    ||||||||| ||||| ||||| |||  || |||||||||| ||| ||||||||||||||||||||    
T  2831537 tgagacactctttaaggattccaaatcaagaaattattttttaataaagtcaaatatttcaattt 2831601  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 270 - 325
Target Start/End: Complemental strand, 25548305 - 25548249
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataa-aaaagtcaaatatttcaatttc 325  Q
    ||||| || |||||||||| ||| |||||||||| |||||| |||||||||||||||    
T  25548305 tttaaggactctaaaagaagaaaatattttataaaaaaagttaaatatttcaatttc 25548249  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 16442080 - 16442128
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatattt 318  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  16442080 tttaaagattctaaaagaataaattagtttataaaaaagtcaaacattt 16442128  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 329
Target Start/End: Original strand, 7465476 - 7465536
Alignment:
Q  269 ttttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttccgat 329  Q
    |||||| |||||| |||||| ||||| ||  ||||||||||||||||||||||||||||||    
T  7465476 ttttaaggattcttaaagaagaaattgttccataaaaaagtcaaatatttcaatttccgat 7465536  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 324
Target Start/End: Original strand, 12307837 - 12307879
Alignment:
Q  282 aaaagaataaattattttataaaaaagtcaaatatttcaattt 324  Q
    ||||||| ||||||||||||||||||||||||||||| |||||    
T  12307837 aaaagaagaaattattttataaaaaagtcaaatattttaattt 12307879  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 326
Target Start/End: Complemental strand, 6048376 - 6048320
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttcc 326  Q
    |||||| |||||||||||| |||||| ||||||||||||| ||| |||| |||||||    
T  6048376 tttaaaaattctaaaagaagaaattaatttataaaaaagtgaaacattttaatttcc 6048320  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 329
Target Start/End: Original strand, 8176326 - 8176385
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttccgat 329  Q
    ||||| ||||||||||||| |||| | ||| ||||||||||||| |||||||||| ||||    
T  8176326 tttaaggattctaaaagaagaaataaatttttaaaaaagtcaaaaatttcaattttcgat 8176385  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 324
Target Start/End: Original strand, 24616292 - 24616326
Alignment:
Q  290 aaattattttataaaaaagtcaaatatttcaattt 324  Q
    ||||||||||||||||| |||||||||||||||||    
T  24616292 aaattattttataaaaatgtcaaatatttcaattt 24616326  T

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Target: scaffold0246 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 270 - 331
Target Start/End: Complemental strand, 18215 - 18154
Alignment:
Q  270 tttaaagattctaaaagaataaattattttataaaaaagtcaaatatttcaatttccgatac 331  Q
    ||||| ||| ||||||||| ||||||| | |||||||||||||||||||||||| |||||||    
T  18215 tttaaggatgctaaaagaagaaattatgtcataaaaaagtcaaatatttcaattcccgatac 18154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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