View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14065_low_11 (Length: 284)
Name: NF14065_low_11
Description: NF14065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14065_low_11 |
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| [»] scaffold0603 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 11490833 - 11491102
Alignment:
| Q |
1 |
cactgttttaaaggagccgatagataatgctagctcaattgtagagcaggttgcaccttataatgtacaaattcccaaatgtcacgtattagcacattat |
100 |
Q |
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| T |
11490833 |
cactgttttaaaggagccgatagataatggtagctcaattgtagagcaggttgcaccttataatgtacaaattcccaaatgtcacgtattagcacattat |
11490932 |
T |
|
| Q |
101 |
tccagtaatccggggacaattcaatgtgaagaaattccgcaagtcctattgcagctaatggtaatccatcacannnnnnngcaattttcttgcctatttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
11490933 |
tccagtaatccggggacaattcaatgtgaagaaattccgcaagttctataacagctaatggtaatccatcacatttttttgcaattttcttgcctacttc |
11491032 |
T |
|
| Q |
201 |
ttctagattggatcgttgttgctcgttacatg-cccaaatgcatgtctggccactaaagaccaacaatct |
269 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
11491033 |
ttctagattggatcgttgttgctcgttacatgccccaaatgcatgtctggcaactaaagaccaacaatct |
11491102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 5 - 269
Target Start/End: Original strand, 11497304 - 11497569
Alignment:
| Q |
5 |
gttttaaaggagccgatagataatgctagctcaattgtagagcaggttgcaccttataatgtacaaattcccaaatgtcacgtattagcacattattcca |
104 |
Q |
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|||||||||||| || ||||| || ||| ||| |||||||||||||||||| | |||| || |||||||||||||||| ||||||||||||||||| |
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| T |
11497304 |
gttttaaaggaggagaaagatagtggtagttcagttgtagagcaggttgcacgtcataacctattgattcccaaatgtcacgcattagcacattattcca |
11497403 |
T |
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| Q |
105 |
gtaatccggggacaattcaatgtgaagaaattccgcaagtcctattgcagctaatggtaatccatcacannnnnnngcaattttcttgcctatttcttct |
204 |
Q |
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| T |
11497404 |
gtaatatggggacaattcaatgcgaagaaaagccgcaattgatactgcagctaatggtataccgtaacatttttttgcaatttccctgccaatttcttct |
11497503 |
T |
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| Q |
205 |
agattggatcgttgttgctcgttacatgc-ccaaatgcatgtctggccactaaagaccaacaatct |
269 |
Q |
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| T |
11497504 |
agattggatcgttgtttgtcattacatgctccaaatgcatgcctggcaactaaagaccaacaatct |
11497569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 5052314 - 5052045
Alignment:
| Q |
1 |
cactgttttaaaggagccgatagataatgctagctcaattgtagagcaggttgcaccttataatgtacaaattcccaaatgtcacgtattagcacattat |
100 |
Q |
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||||||||||||||||| || ||| ||| |||||| ||||||| |||||||| || ||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
5052314 |
cactgttttaaaggagctgaaagagaattgtagctcgattgtagcgcaggttggacgacatattgtaccaattcccaaatgtcacgtattagcacattat |
5052215 |
T |
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| Q |
101 |
tccagtaatccggggacaattcaatgtgaagaaattccgcaagtcctattgcagctaatggtaatccatcacannnnnnngcaattttcttgcctatttc |
200 |
Q |
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||||||||||| |||| ||||| ||||||| ||||| | || |||||||||||||||||||||||| ||||||||| | || ||||| |
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| T |
5052214 |
tccagtaatcctgggaaaattcttcacgaagaaaactcgcaactgttactgcagctaatggtaatccatcacacttttctgcaattttccttccaatttc |
5052115 |
T |
|
| Q |
201 |
ttctagattggatcgttgttgctcgttacat-gcccaaatgcatgtctggccactaaagaccaacaatct |
269 |
Q |
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||| ||||| ||| ||| ||| | ||||| | | ||||||||||||||||| |||| |||||| |||||| |
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| T |
5052114 |
ttcaagatttgatagtttttggtagttacgtggtccaaatgcatgtctggcaactatagaccagcaatct |
5052045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 121
Target Start/End: Original strand, 21539347 - 21539463
Alignment:
| Q |
5 |
gttttaaaggagccgatagataatgctagctcaattgtagagcaggttgcaccttataatg-tacaaattcccaaatgtcacgtattagcacattattcc |
103 |
Q |
| |
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||||||||||| |||| |||| ||| ||| ||||||||||| |||||||||| | |||||| ||| ||||||||||||||||| ||| ||||||||||| |
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| T |
21539347 |
gttttaaaggatccga-agatcatggtagttcaattgtagaacaggttgcacgtgataatggtaccaattcccaaatgtcacgagttaacacattattcc |
21539445 |
T |
|
| Q |
104 |
agtaatccggggacaatt |
121 |
Q |
| |
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| T |
21539446 |
aataatcttgggacaatt |
21539463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 140 - 269
Target Start/End: Complemental strand, 4130224 - 4130094
Alignment:
| Q |
140 |
caagtcctattgcagctaatggtaatccatcacannnnnnngcaattttcttgcctatttcttctagattggatcgttgttgctcgttacatgcc-caaa |
238 |
Q |
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||||| ||||||||||||||||||| |||||||| ||||||| | || |||| ||||||||||||||||||||| | ||||| || |||| |
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| T |
4130224 |
caagtgctattgcagctaatggtaacccatcacattttttggcaatttctctaccaattttttctagattggatcgttgttggtagttacttgttacaaa |
4130125 |
T |
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| Q |
239 |
tgcatgtctggccactaaagaccaacaatct |
269 |
Q |
| |
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| T |
4130124 |
tgcatgtctggcaagtaaagaccaacaatct |
4130094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 31 - 269
Target Start/End: Complemental strand, 17312138 - 17311896
Alignment:
| Q |
31 |
tagctcaattgtagagcaggttgcaccttataatgtacaaattcccaaatgtcacgtattagcacattattccagtaatccgg---ggacaattcaatgt |
127 |
Q |
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| T |
17312138 |
tagctcaattgtagagcaggtagaatatcataatgtaccaattcccaaattttatgtattaggaaattattcaagtaatccggctgggacaatttgatgc |
17312039 |
T |
|
| Q |
128 |
gaagaaattccgcaagtcctattgcagctaatggtaatccatcacannnnnnngcaattttcttgcctatttcttctagattggatcgttgttgctcgtt |
227 |
Q |
| |
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|||||| || |||||| ||| |||||||||||||||||||| ||| || |||||| | |||| |||||||| |||||||||||| || | ||| |
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| T |
17312038 |
aaagaaaatctgcaagtgctactgcagctaatggtaatccataacattttattgccattttcctacctacttcttctaaattggatcgttgctggttgtt |
17311939 |
T |
|
| Q |
228 |
acatgccc-aaatgcatgtctggccactaaagaccaacaatct |
269 |
Q |
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||||| | ||||||||||||||| |||||||||||||||||| |
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| T |
17311938 |
acatgttctaaatgcatgtctggcaactaaagaccaacaatct |
17311896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 163
Target Start/End: Complemental strand, 18388440 - 18388282
Alignment:
| Q |
5 |
gttttaaaggagccgatagataatgctagctcaattgtagagcaggttgcaccttataatgtacaaattcccaaatgtcacgtattagcacattattcca |
104 |
Q |
| |
|
|||||||||||| |||||||||| ||| |||||||||||||| | ||||| | ||||| ||| |||||||||||||||| | |||| ||| |||||| |
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| T |
18388440 |
gttttaaaggagtcgatagataactgtagatcaattgtagagcacggtgcacatcataatctaccaattcccaaatgtcactttctagcgcataattcca |
18388341 |
T |
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| Q |
105 |
gtaatccggggacaattcaatgtgaagaaattccgcaagtcctattgcagctaatggta |
163 |
Q |
| |
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|||| |||||||| || | ||||||||| ||| ||||| ||||||||||||||||| |
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| T |
18388340 |
gtaacttggggacaaatctaagtgaagaaaatccccaagtgatattgcagctaatggta |
18388282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0603 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0603
Description:
Target: scaffold0603; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 269
Target Start/End: Original strand, 4605 - 4785
Alignment:
| Q |
90 |
tagcacattattccagtaatccggggacaattcaatgtgaagaaattccgcaagtcctattgcagctaatggtaatccatcacannnnnnngcaattttc |
189 |
Q |
| |
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|||||||| |||||||||||| ||||||||| | || ||||| ||| ||||| ||| |||||| |||||| |||||| ||| ||||||| |
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| T |
4605 |
tagcacataattccagtaatctagggacaatttagtgcaaagaatatccccaagtgctactgcagcaaatggtgatccataacatttattagcaatttct |
4704 |
T |
|
| Q |
190 |
ttgcctatttcttctagattggatcgttgttgctcgttacatgc-ccaaatgcatgtctggccactaaagaccaacaatct |
269 |
Q |
| |
|
||||| |||||||||||||||||| | ||||| ||||||||||| ||||||||| ||| || | ||||||||| |||||| |
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|
| T |
4705 |
ttgccaatttcttctagattggattgatgttggtcgttacatgctccaaatgcaagtccagcaagtaaagaccagcaatct |
4785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 269
Target Start/End: Complemental strand, 5988794 - 5988671
Alignment:
| Q |
147 |
tattgcagctaatggtaatccatcacannnnnnngcaattttcttgcctatttcttctagattggatcgttgttgctcgttacatg-cccaaatgcatgt |
245 |
Q |
| |
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|||||||||| |||||||||||||||| ||||||||| |||| |||||||||||||||||| ||| | ||| | |||| |||||||||||| |
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| T |
5988794 |
tattgcagctgatggtaatccatcacatttttttgcaattttcctgccaatttcttctagattggattgttttatgtcgctgcatgtgccaaatgcatgt |
5988695 |
T |
|
| Q |
246 |
ctggccactaaagaccaacaatct |
269 |
Q |
| |
|
|| || |||||||||||||||||| |
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| T |
5988694 |
ctagcaactaaagaccaacaatct |
5988671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 269
Target Start/End: Complemental strand, 16447046 - 16446957
Alignment:
| Q |
181 |
gcaattttcttgcctatttcttctagattggatcgttgttgctcgttacatgc-ccaaatgcatgtctggccactaaagaccaacaatct |
269 |
Q |
| |
|
||||||| | |||| |||||||||||||||| || || ||| | |||||||| ||||||||||||||||| | ||||||||| |||||| |
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|
| T |
16447046 |
gcaatttccctgccaatttcttctagattggttctttcttggtagttacatggtccaaatgcatgtctggcaattaaagaccagcaatct |
16446957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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