View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14065_low_2 (Length: 1085)
Name: NF14065_low_2
Description: NF14065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14065_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 615; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 18 - 912
Target Start/End: Original strand, 21073653 - 21074530
Alignment:
| Q |
18 |
actccggagccgcactcggtggccacaaaacatctcaccgctcacaacctcataacaagaaacaaaaacacaatcatgctgttaacaatgatgataaaga |
117 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
21073653 |
actccggagctgcactcggtggccacaaaacatctcaccgttcacaacctcaaaacaagaaacaaagacacaatcatgctgttaacaaggatgataaaga |
21073752 |
T |
|
| Q |
118 |
tgatgagaaacagaaacattgttgtcgtgtttgcaacaaggttttttcatcgaagcaggctttgtgtggacacatgagatgtcacaaaagagatgggaag |
217 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21073753 |
tgatgagaaacagaaacattgttgtcgtgtttgcaacaaggttttttcatccaagcaggctttgtgtggacacatgagatgtcacaaaagagatgggaag |
21073852 |
T |
|
| Q |
218 |
agtattcacctgccgacttcatcatctattgacttatcaaaatatttgttaccaatatggcatccgaccaataaaggtagcaagaggaatactatgatcg |
317 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| | |||||||||||||||||||||||||||| | | || | |
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| T |
21073853 |
gatattcacctgccgacttcatcatctattgatttatcaaaatatttgctaccaatatcgtatccgaccaataaaggtagcaagaggaaaa---tcattg |
21073949 |
T |
|
| Q |
318 |
atgaagatgttgctcgaacactcatcgaaatatctcatgatgataataatcatggtgacagtaagaggctgaaactttcctgcggttatatggttaatga |
417 |
Q |
| |
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|||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
21073950 |
atgaagatgttgctcgaacactcatcaaaatatcttatga---taataatcatggtgacagtaagaggctgaaactttcctgcggtgatatggttaatga |
21074046 |
T |
|
| Q |
418 |
gacggtcaaggaacaaactgtgatgcaaactactggtcatgttagggttaatgatgaaacagtggtgatcaaagagaaagataacagcagaagtaaaaga |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||| ||||||| |
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|
| T |
21074047 |
gacggtcaaggaacaaactgtgatgcaaactactggtcatgttagggttaatgatgaaacagttgtgatcaaagagaaagatggcagcggaaataaaaga |
21074146 |
T |
|
| Q |
518 |
ctcaaactttcaagcaattatgaagatattggtgacattgatgaatcaccagagaccaaggtaaaggataataatacctctattgacattgaagagaaga |
617 |
Q |
| |
|
|||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21074147 |
ctcaaattttcaagcaattctgaagatattagtgacattgatgaatcaccagagaccaaggtaaaggataataatacctctattgacattgaagagaaga |
21074246 |
T |
|
| Q |
618 |
agaacaataatgaaggtgaaaccgtgagagaacgaagccataatgaattgaaggcagatagagttgttatgaattttgatttgaatgagattccaatgaa |
717 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21074247 |
agaacaataatgaaggtgaaaccgtgagagaaccaagccatattgaattgaaggcagatagagttgttatgaattttgatttgaatgagattccaatgaa |
21074346 |
T |
|
| Q |
718 |
agatgttgcagatgagtgaaaccaattagtctttcattttcttatttaggtgatttgaactcattgttctannnnnnnagggtgtttgttccgttcaaaa |
817 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
21074347 |
aga-------------tgaaaccaattagtctttcattttcttatttaggtgatttgaactcattgttctattttattagggtgtttgttctgttcaaag |
21074433 |
T |
|
| Q |
818 |
caattgatttcttttttccaagatatatattatgaatgtgttcacaaacataaactcaat---agagggatatggttatagttttgtctttaagaaca |
912 |
Q |
| |
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|| |||||| |||||| ||||||||||||| ||||| |||||||||| |||||||||| |||||||||||||| |||| | |||| ||||||| |
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| T |
21074434 |
aaactgatttgtttttt-caagatatatattctgaatctgttcacaaatgtaaactcaatggaggagggatatggttacagttatttcttcaagaaca |
21074530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 595 - 785
Target Start/End: Original strand, 21078929 - 21079119
Alignment:
| Q |
595 |
ctctattgacattgaagagaagaagaacaataatgaaggtgaaaccgtgagagaacgaagccataatgaattgaaggcagatagagttgttatgaatttt |
694 |
Q |
| |
|
|||||||||||||||||| | |||||| ||||||||||||||| | | |||||| | || ||||||||||||||| |||| | |||||||| ||||||| |
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|
| T |
21078929 |
ctctattgacattgaagaaatgaagaaaaataatgaaggtgaatcagggagagagcagagtcataatgaattgaagtcagaaaaagttgttaggaatttt |
21079028 |
T |
|
| Q |
695 |
gatttgaatgagattccaatgaaagatgttgcagatgagtgaaaccaattagtctttcattttcttatttaggtgatttgaactcattgtt |
785 |
Q |
| |
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|||||||| ||| |||||| || | |||||||||||| || ||| | |||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
21079029 |
gatttgaacgagcttccaacaaatggtgttgcagatgaatgtgttcaactggtctttcattttctaatttaggtgatttgaactcattgtt |
21079119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 28 - 168
Target Start/End: Complemental strand, 21155920 - 21155777
Alignment:
| Q |
28 |
cgcactcggtggccacaaaacatctcaccgc---tcacaacctcataacaagaaacaaaaacacaatcatgctgttaacaatgatgataaagatgatgag |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||| |||||||| |||| || |||||| | ||||||||| |
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| T |
21155920 |
cgcactcggtggccacaaaacatctcaccgccgctcacaacctctacacaagaaacagcgacatgatcatgctattaataaggatgatgatgatgatgag |
21155821 |
T |
|
| Q |
125 |
aaacagaaacattgttgtcgtgtttgcaacaaggttttttcatc |
168 |
Q |
| |
|
||||||||| || |||||| |||||||||||||||||||||||| |
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|
| T |
21155820 |
aaacagaaatatagttgtcctgtttgcaacaaggttttttcatc |
21155777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 658 - 783
Target Start/End: Complemental strand, 21155264 - 21155140
Alignment:
| Q |
658 |
taatgaattgaaggcagatagagttgttatgaattttgatttgaatgagattccaatgaaagatgttgcagatgagtgaaaccaattagtctttcatttt |
757 |
Q |
| |
|
||||||||||||| || | ||||||||||||||||||||||||||||| |||||| ||||||||||| |||| ||||||||||| ||| |||||| | |
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| T |
21155264 |
taatgaattgaagccaaaaggagttgttatgaattttgatttgaatgagcttccaactgaagatgttgcacatgaatgaaaccaattggtc-ttcattgt |
21155166 |
T |
|
| Q |
758 |
cttatttaggtgatttgaactcattg |
783 |
Q |
| |
|
||||||||||| |||| ||||||||| |
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|
| T |
21155165 |
cttatttaggtcatttaaactcattg |
21155140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 661 - 785
Target Start/End: Complemental strand, 21160779 - 21160655
Alignment:
| Q |
661 |
tgaattgaaggcagatagagttgttatgaattttgatttgaatgagattccaatgaaagatgttgcagatgagtgaaaccaattagtctttcattttctt |
760 |
Q |
| |
|
|||||||||| || | ||||||||||||||||||||||||||||| |||||| |||||||| ||||||| | ||||||||| |||||||||| |||| |
|
|
| T |
21160779 |
tgaattgaagccaaaaggagttgttatgaattttgatttgaatgagtttccaacagaagatgtttcagatgaataaaaccaattggtctttcattgtctt |
21160680 |
T |
|
| Q |
761 |
atttaggtgatttgaactcattgtt |
785 |
Q |
| |
|
|||||| |||||||||||||||| |
|
|
| T |
21160679 |
ggttaggtcatttgaactcattgtt |
21160655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 1e-31; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 678 - 788
Target Start/End: Complemental strand, 27738872 - 27738762
Alignment:
| Q |
678 |
gagttgttatgaattttgatttgaatgagattccaatgaaagatgttgcagatgagtgaaaccaattagtctttcattttcttatttaggtgatttgaac |
777 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||| |||||||| || |||| ||||||||||| |||||||||| |||||||||||| |||||||| |
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|
| T |
27738872 |
gagttgttatgaattttgatttgaatgcgcttccaatagaagatgtttcacatgaatgaaaccaattggtctttcattgtcttatttaggtcatttgaac |
27738773 |
T |
|
| Q |
778 |
tcattgttcta |
788 |
Q |
| |
|
||||||||||| |
|
|
| T |
27738772 |
tcattgttcta |
27738762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 658 - 788
Target Start/End: Complemental strand, 27731857 - 27731727
Alignment:
| Q |
658 |
taatgaattgaaggcagatagagttgttatgaattttgatttgaatgagattccaatgaaagatgttgcagatgagtgaaaccaattagtctttcatttt |
757 |
Q |
| |
|
||||||||||||| || | ||||||||||||||||||||||||||||| |||||| | ||||| ||| |||| ||||||||||||||||||||| | |
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|
| T |
27731857 |
taatgaattgaagccaaaaggagttgttatgaattttgatttgaatgagcttccaacagaggatgtggcacatgaatgaaaccaattagtctttcatcgt |
27731758 |
T |
|
| Q |
758 |
cttatttaggtgatttgaactcattgttcta |
788 |
Q |
| |
|
||||||||||| |||| |||||||||||||| |
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|
| T |
27731757 |
cttatttaggtcattttaactcattgttcta |
27731727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 116 - 194
Target Start/End: Complemental strand, 27732377 - 27732299
Alignment:
| Q |
116 |
gatgatgagaaacagaaacattgttgtcgtgtttgcaacaaggttttttcatcgaagcaggctttgtgtggacacatga |
194 |
Q |
| |
|
||||||||||||||||||||| | |||| |||||||||||||||||||||||| || ||||||| || ||||| |||| |
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|
| T |
27732377 |
gatgatgagaaacagaaacataggtgtcctgtttgcaacaaggttttttcatccaacaaggctttttgcggacatatga |
27732299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 8e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 678 - 787
Target Start/End: Original strand, 21249714 - 21249823
Alignment:
| Q |
678 |
gagttgttatgaattttgatttgaatgagattccaatgaaagatgttgcagatgagtgaaaccaattagtctttcattttcttatttaggtgatttgaac |
777 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| || ||||||||||| |||| ||||||||||| || ||||||| | |||||||||| |||||||| |
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|
| T |
21249714 |
gagttgttatgaattttgatttgaatgagcttcaaacagaagatgttgcacatgaatgaaaccaattggtttttcattgtattatttaggtcatttgaac |
21249813 |
T |
|
| Q |
778 |
tcattgttct |
787 |
Q |
| |
|
| |||||||| |
|
|
| T |
21249814 |
taattgttct |
21249823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 105 - 194
Target Start/End: Original strand, 21249285 - 21249374
Alignment:
| Q |
105 |
atgatgataaagatgatgagaaacagaaacattgttgtcgtgtttgcaacaaggttttttcatcgaagcaggctttgtgtggacacatga |
194 |
Q |
| |
|
|||||||| | |||||| |||||||||||||| |||||| |||||||||||||||||||||||| || ||||||| || ||||| |||| |
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|
| T |
21249285 |
atgatgatgatgatgatcagaaacagaaacatggttgtcttgtttgcaacaaggttttttcatccaataaggctttatgcggacatatga |
21249374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 3074013 - 3073961
Alignment:
| Q |
116 |
gatgatgagaaacagaaacattgttgtcgtgtttgcaacaaggttttttcatc |
168 |
Q |
| |
|
|||||||| ||| |||||||| |||||| |||||||||||| ||||||||||| |
|
|
| T |
3074013 |
gatgatgaaaaatagaaacatagttgtcctgtttgcaacaaagttttttcatc |
3073961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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