View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14065_low_3 (Length: 679)
Name: NF14065_low_3
Description: NF14065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14065_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 20 - 449
Target Start/End: Original strand, 40360088 - 40360521
Alignment:
| Q |
20 |
agcatgacttaacctttagtagagttctcactttcccaaatttcttgttcttattcccttttctctttgtaattgtttcactttcaacaatctgaggtac |
119 |
Q |
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| T |
40360088 |
agcatgacttaacctttagtagagttctcactttcccaaatttcttgttcttattcccttttctctttgtaattgtttcactttcaacaatctcaggtac |
40360187 |
T |
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| Q |
120 |
ctatttgaaacaaagaacaatgttagtctttagatgggagtttggttttatcgaatatttattgtgactgcaataattgcggttgtggattgcaatttaa |
219 |
Q |
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| T |
40360188 |
ctatttgaaacaaggaacaatgttagtctttagatgggagtttggttttatcgaatatttattgtgactgcaataattgcggttgtggattgcaatttaa |
40360287 |
T |
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| Q |
220 |
aacaagattttaatagaaag----ttgattacctcgtttgagatttttgttttccttgctgcaacactttgaacaacactgtcagcactacgtgattttt |
315 |
Q |
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| T |
40360288 |
aacaatattttaagagaaagttaattgattacctcgtttgagatttttgttttccttgctgcaacactttgaacaacactgtcagcactacgtgattttt |
40360387 |
T |
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| Q |
316 |
ggtgcatgacaacaatgtttgaactcttacattcttcttcttcctcttccttccttgtatcagcttcggtgcaataaattctgaaactcggagatccttg |
415 |
Q |
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| T |
40360388 |
ggtgcatgacaacaatgtttgaactcttacattcttcttcttcctcttccttccttgtatcagcttcggtgcaataaattctgaaactcggagatccttg |
40360487 |
T |
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| Q |
416 |
gtataaaaatcttccgacttcgtcgtcgtcgtcg |
449 |
Q |
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| T |
40360488 |
gtataaaaatcttccaacttcatcgtcgtcgtcg |
40360521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 560 - 675
Target Start/End: Original strand, 40360641 - 40360756
Alignment:
| Q |
560 |
cactgtccctttaatgtttccctcctctgttttggtctctgcctcaactttctcatttgaatcaaccactttctcttctcttagatcaatgtctttgtta |
659 |
Q |
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||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40360641 |
cactgtcccttcaatatttccctcctctgttttggtctctgcctcaactttctcatttgaatcaaccactttctcttctcttagatcaatgtctttgtta |
40360740 |
T |
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| Q |
660 |
atgttaatcttctcct |
675 |
Q |
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| T |
40360741 |
atgttcatcttctcct |
40360756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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