View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14065_low_5 (Length: 587)
Name: NF14065_low_5
Description: NF14065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14065_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 208 - 570
Target Start/End: Original strand, 1786596 - 1786958
Alignment:
| Q |
208 |
ccaaactacgttacctaatctcacaacagaaccgaatccaaagaagctgaaactcacagaaaacgcaatgatcatataaaatagcacgcactcagtcaat |
307 |
Q |
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| T |
1786596 |
ccaaactacgttacctaatctcacaacagaaccgaatccaaagaagctgaaactcacagaaaacgcaatgatcatataaaatcgcacgcactcagtcaat |
1786695 |
T |
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| Q |
308 |
atcaaacgatttcacagtccaaatcaagaaagtgtaaaaaacgaacaaacggaaattaaattgaattgtaacggaacaacgaactttcaactcttcacga |
407 |
Q |
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| T |
1786696 |
atcaaacgatttcacagtccaaatcaagaaagtgtaaaaaacgaacaaacggaaattaaattgaattgtaacggaacaacgaactttcaactcttcacga |
1786795 |
T |
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| Q |
408 |
cggacgtaatcagcgagcgattgttgttctaattacgaatctccaatcttcaaggaaacgcacttttttacggaaacgcgctttttctgatttagaaatg |
507 |
Q |
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| T |
1786796 |
cggacgtaatcagcgagcgatcgttgttctaattacgaatctccaatcttcaaggaaacgcacttttttacggaaacgcgctttttctgatttagaaatg |
1786895 |
T |
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| Q |
508 |
ttgattgaagaataaagcgattataagagaagtttatatatacgaagtgaaattcgagagggt |
570 |
Q |
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| T |
1786896 |
ttgattgaagaataaagcgattataagagaagtttatatatacgaagtgaaattcgagagggt |
1786958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 1786506 - 1786560
Alignment:
| Q |
109 |
atcaacacatcagaatatgcaaaacttcaataaaaattcaaccaaaaacagcttc |
163 |
Q |
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| T |
1786506 |
atcaacacatcagaatatgcaaaacttcaataaaaattcaaccaaaaacagcttc |
1786560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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