View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14065_low_6 (Length: 546)
Name: NF14065_low_6
Description: NF14065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14065_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 309 - 530
Target Start/End: Original strand, 4804857 - 4805078
Alignment:
| Q |
309 |
aaattgttccctctctgaaacaagaaaagtgaaaacctttcagtcttgttaagagcataaagtatatgacaatgacatagacaccaagattagattagct |
408 |
Q |
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| T |
4804857 |
aaattgttccctctctgaaacaagaaaagtgaaaacctttcagtcttgttaagagcataaagtatatgacaatgacatagacactaagattagattagct |
4804956 |
T |
|
| Q |
409 |
aacagctcagctcttatacatcaaacaacaaataaagcagattcccttttctcctttgtccacagtctacacaacaaactcaacaatcttcaattttgtt |
508 |
Q |
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| T |
4804957 |
aacagctcagctcttatacatcaaacaacaaataaagcagattcccttttctcctttgtccacagtccacacaacaaactcaacaatcttcaattttgtt |
4805056 |
T |
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| Q |
509 |
tgatgctaagcaaagattatgt |
530 |
Q |
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|||||||||||||||||||||| |
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| T |
4805057 |
tgatgctaagcaaagattatgt |
4805078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 111; Significance: 9e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 32 - 168
Target Start/End: Complemental strand, 10132689 - 10132557
Alignment:
| Q |
32 |
ccaatttagtccctgatcgaactctggtgcttctgatcgattctttatcaattaactactaaatacttattatgatgatgatttattaataaacaaaatt |
131 |
Q |
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| T |
10132689 |
ccaatttagtccctgatcgaactctggtgcttctgatcgattctttat-aattaactactaaatacttat---gatgatgatttattaataaacaaaatt |
10132594 |
T |
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| Q |
132 |
gttagcttgttaaaataacacaagagaatcaacatca |
168 |
Q |
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| T |
10132593 |
gttagcttgttaaaataacacaagagaatcaatatca |
10132557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 222 - 282
Target Start/End: Complemental strand, 10132502 - 10132442
Alignment:
| Q |
222 |
gaataaatccgatcggaaatcgaaggtggaactgttggaagacgcatgattaagagaattg |
282 |
Q |
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| T |
10132502 |
gaataaatccgatcggaaatcgaaggtggaactgttggaagacgcatgattaagagaattg |
10132442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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