View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14065_low_9 (Length: 316)
Name: NF14065_low_9
Description: NF14065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14065_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 4 - 243
Target Start/End: Complemental strand, 1589835 - 1589596
Alignment:
| Q |
4 |
aaaagaaaatacagtacatgatatgattggttccatgaaacataagtagtattgctatgagttttgatgagcacgggggccacctgttcacgttctcaga |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1589835 |
aaaagaaaatacagtacatgatatgattggttccatgaaacgtaagtagtattactatgagttttgatgagcacgggggccacctgttcacgttctcaga |
1589736 |
T |
|
| Q |
104 |
aggtaagagaattaattggtcacatgttatcttttctcaaaatgtatatgcaatttagtgnnnnnnnnactataaataagcaattatagagttaatttga |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
1589735 |
aggtaagagaattaattggtcacatgttatcttttctcaaaatgtatatgcaatttagagtttattttactataaataagcaattatagagttaatttga |
1589636 |
T |
|
| Q |
204 |
aatatttaatcaatttttctaaaatgaagtggcaaataca |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1589635 |
aatatttaatcaatttttctaaaatgaagtggcaaataca |
1589596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 262 - 298
Target Start/End: Complemental strand, 1589607 - 1589571
Alignment:
| Q |
262 |
gtggcaaatacattacatctcttttctatataatact |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1589607 |
gtggcaaatacattacatctcttttctatataatact |
1589571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University