View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14066_high_1 (Length: 528)
Name: NF14066_high_1
Description: NF14066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14066_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 493; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 11 - 507
Target Start/End: Original strand, 42026059 - 42026555
Alignment:
| Q |
11 |
ttatacttaattagaacttagatgtaaagtaattaatgtatggtatataaaatggtaagagtagaaaagataagagggaaaaaagaaagtataaccagaa |
110 |
Q |
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| T |
42026059 |
ttatacttaattagaacttagatgtaaagtaattaatgtatggtatataaaatggtaagagtagaaaagataagagggaaaaaagaaagtataaccagaa |
42026158 |
T |
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| Q |
111 |
ggttatgatgagttggggagaagaaagagtgtcccaaatgaaactgattaggggatggcagaagtaatgcacgcatgttaactggaagcagattagtgca |
210 |
Q |
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| T |
42026159 |
ggttatgatgagttggggagaagaaagagtgtcccaaatgaaactgattaggggatggcagaagtaatgcacgcatgttgactggaagcagattagtgca |
42026258 |
T |
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| Q |
211 |
atgaccgcatctcacagtcacggtcttgaacaagcttgtgcaaggaacactcacctgaaaaaagatgaaggagaatcagttatatttgcataaaagaaaa |
310 |
Q |
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| T |
42026259 |
atgaccgcatctcacagtcacggtcttgaacaagcttgtgcaaggaacactcacctgaaaaaagatgaaggagaatcagttatatttgcataaaagaaaa |
42026358 |
T |
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| Q |
311 |
tggagaagaaaaaccctagctaaggtagtgttggaaagtgagaaaaaatagtgatgtttcatacagcaaggatggtgtcacagatggtgcagtggacata |
410 |
Q |
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| T |
42026359 |
tggagaagaaaaaccctagctaaggtagtgttggaaagtgagaaaaaatagtgatgtttcatacagcaaggatggtgtcacagatggtgcagtggacata |
42026458 |
T |
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| Q |
411 |
acaaagttgctcggaaggagggaggtggtccaaggataatgttgtggttgaagaggacgacattatatattcggtttgatgattggtctcttgattg |
507 |
Q |
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| T |
42026459 |
acaaagttgctcggaaggagggaggtggtccaaggataatgttgtggttgaagaggacgacattatatattcggtttgatgattggtctcttgattg |
42026555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 179 - 273
Target Start/End: Complemental strand, 8885917 - 8885823
Alignment:
| Q |
179 |
gcacgcatgttaactggaagcagattagtgcaatgaccgcatctcacagtcacggtcttgaacaagcttgtgcaaggaacactcacctgaaaaaa |
273 |
Q |
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|||||||||||||||| || || || ||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||| |||| |
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| T |
8885917 |
gcacgcatgttaactgagagaaggttggtgcaatgaccacatctcactgtcacagtcttgaacaaacttgtgcaaggaacactcacctgagaaaa |
8885823 |
T |
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