View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14066_low_2 (Length: 480)
Name: NF14066_low_2
Description: NF14066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14066_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 17 - 465
Target Start/End: Complemental strand, 35479256 - 35478808
Alignment:
| Q |
17 |
atttataactttaggtgtgattaaacatagaggaaggatttgttagagattcatctataaggtataaagcctaattttggttaatgagttaagcgagtac |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35479256 |
atttataactttaggtgtgattaaacatagaggaaggatttgttagagattcagctataaggtataaagcctaattttggttaatgagttaagtgagtac |
35479157 |
T |
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| Q |
117 |
aaataaatagtaaaaatactttttcatggttttttgggtaaattgttcatcctttatgtgcagctgcagagactaatgtctcgtcacctataaagataaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35479156 |
aaataaatagtaaaaatactttttcatggttttttgggtaaattgttcatcctttatgtgcagctgcagagactaatgtctcgtcacctataaagataaa |
35479057 |
T |
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| Q |
217 |
atgagagtgctacctgccatctccatggattgaaggtgcgcgcatctttgaaatgatcggggtttagatgtacggcacgaaatgatgcaaagactttcca |
316 |
Q |
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| T |
35479056 |
atgagagtgctacctgccatctccatggattgaaggtgcgcgcatctttgaaatgatcggggtttagatgtacggcacgaaatgatgcaaagactttcca |
35478957 |
T |
|
| Q |
317 |
cccctttggaatagtgtagcctgtattacaagtcaaaaattaaaattcaaaataaatgttttgattttaaattatgtttttgtcatgataatacatacta |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35478956 |
cccctttggaatagtgtagcctgtattacaagtcaaaaattaaaattcaaaataaatgttttgattttaaattatgtttttgtcatgataatgtatacta |
35478857 |
T |
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| Q |
417 |
tacctttgatattgatgtctgtcattgctctcctaaatatcccaccaat |
465 |
Q |
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| T |
35478856 |
tacctttgatattgatgtctgtcattgctctcctaaatatcccaccaat |
35478808 |
T |
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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 227 - 306
Target Start/End: Complemental strand, 31557257 - 31557178
Alignment:
| Q |
227 |
tacctgccatctccatggattgaaggtgcgcgcatctttgaaatgatcggggtttagatgtacggcacgaaatgatgcaa |
306 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| || || || | ||| || |||||||||||||||| |
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| T |
31557257 |
tacctgccatctccatggattgaaggtgcgagcatctttgaaatgttcaggattcaaatgcacagcacgaaatgatgcaa |
31557178 |
T |
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