View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14066_low_4 (Length: 280)
Name: NF14066_low_4
Description: NF14066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14066_low_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 13 - 280
Target Start/End: Complemental strand, 45458487 - 45458220
Alignment:
| Q |
13 |
tcatcagtggttctatcacaagggagtaggccaacttttgcatttctacacaacagtgagtataaagcaaaaataccacctggaaagtattgtaaatgaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||| |
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| T |
45458487 |
tcatcagtggttctatcacaagggagtaggccaacttttgcatttctacacaacagtgagtataaagcaaaaataccacctggaaaatattttcaatgaa |
45458388 |
T |
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| Q |
113 |
gtgaatataaatggagtaaataaatatttactggaactgaagtgaataaaattgatttattattacgtaccctctcctttatcatcagctttgagcacta |
212 |
Q |
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| T |
45458387 |
gtgaatataaatggagtaaataaatatttactgaaactgaagtgaataaaattgatttattattatgtaccctctcctttatcatcagctttgagcacta |
45458288 |
T |
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| Q |
213 |
tgatggcatacttgatcaaagaaatagttgttagagtccaaaaaatgaaggagaagagttcataaaca |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45458287 |
tgatggcatacttgatcaaagaaatagttgttagagtccaaaaaatgaaggagaagagttcataaaca |
45458220 |
T |
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