View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14066_low_5 (Length: 280)
Name: NF14066_low_5
Description: NF14066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14066_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 263
Target Start/End: Original strand, 6944948 - 6945194
Alignment:
| Q |
17 |
aatatactcccgaaaaataagtgggtataggaagtcctgttggcgagatctagctcgttctaaatatacttgatattccttcattttagaaattctattt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6944948 |
aatatactcccgaaaaataagtgggtataggaagtcctgttggcgagatctagctcgttctaaatatacttgatattccttcattttagaaattctattt |
6945047 |
T |
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| Q |
117 |
ggtcaaaggatcagagattcattggattatcaaatgatacatagtgcgatacagtcaaaacaaggtattctatatatatattagaattgnnnnnnnnnnn |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6945048 |
ggtcaaaggatcagagattcattggattatcaaatgatacatagtgcgatacagtcaaaacaaggtattctatatatatattagaattgaaaaaaaaaaa |
6945147 |
T |
|
| Q |
217 |
nncaaatatgaatagatacctagaaaacaagttaaaacccattaatg |
263 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
6945148 |
caaatatatgaatagatacctagaaaacaagttaaaacccattaatg |
6945194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 263
Target Start/End: Complemental strand, 48942714 - 48942469
Alignment:
| Q |
17 |
aatatactcccgaaaaataagtgggtataggaagtcctgttggcgagatctagctcgttctaaatatacttgatattccttcattttagaaattctattt |
116 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48942714 |
aatatactcccgaaaaataagtgggtataggaagtcctgttggcgagatctagctcgttctaaatatacttgatattccttcattttagaaattctattt |
48942615 |
T |
|
| Q |
117 |
ggtcaaaggatcagagattcattggattatcaaatgatacatagtgcgatacagtcaaaacaaggtattctatatatatattagaattgnnnnnnnnnnn |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48942614 |
ggtcaaaggatcagagattcattggattatcaaatgatacatagtgcgatacagtcaaaacaaggtattctatatatatattagaattgaaagaaaaaaa |
48942515 |
T |
|
| Q |
217 |
nncaaatatgaatagatacctagaaaacaagttaaaacccattaatg |
263 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
48942514 |
at-atatatgaatagatacctagaaaacaagttaaaacccattaatg |
48942469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 263
Target Start/End: Complemental strand, 13234308 - 13234062
Alignment:
| Q |
17 |
aatatactcccgaaaaataagtgggtataggaagtcctgttggcgagatctagctcgttctaaatatacttgatattccttcattttagaaattctattt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13234308 |
aatatactcccgaaaaataagtgggtataggaagtcctgttggcgagatctagctcgttctaaatatacttgatattccttcattttagaaattctattt |
13234209 |
T |
|
| Q |
117 |
ggtcaaaggatcagagattcattggattatcaaatgatacatagtgcgatacagtcaaaacaaggtattctatatatatattagaattgnnnnnnnnnnn |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13234208 |
ggtcaaaggatcagagattcattggattatcaaatgatacatagtgcgatacagtcaaaacaaggtattctatatatatattagaattgaaaaaaaaaaa |
13234109 |
T |
|
| Q |
217 |
nncaaatatgaatagatacctagaaaacaagttaaaacccattaatg |
263 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
13234108 |
tatatatatgaatagatacctagaaaacaagttaaaacccattaatg |
13234062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 263
Target Start/End: Complemental strand, 18302142 - 18301897
Alignment:
| Q |
17 |
aatatactcccgaaaaataagtgggtataggaagtcctgttggcgagatctagctcgttctaaatatacttgatattccttcattttagaaattctattt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18302142 |
aatatactcccgaaaaataagtgggtataggaagtcctgttggcgagatctagctcgttctaaatatacttgatattccttcattttagaaattctattt |
18302043 |
T |
|
| Q |
117 |
ggtcaaaggatcagagattcattggattatcaaatgatacatagtgcgatacagtcaaaacaaggtattctatatatatattagaattgnnnnnnnnnnn |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18302042 |
ggtcaaaggatcagagattcattggattatcaaatgatacatagtgcgatacagtcaaaacaaggtattctatatatatattagaattgaaaaaaaaaat |
18301943 |
T |
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| Q |
217 |
nncaaatatgaatagatacctagaaaacaagttaaaacccattaatg |
263 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
18301942 |
at-atatatgaatagatacctagaaaacaagttaaaacccattaatg |
18301897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 129 - 263
Target Start/End: Original strand, 19675492 - 19675623
Alignment:
| Q |
129 |
agagattcattggattatcaaatgatacatagtgcgatacagtcaaaacaaggtattctatatatatattagaattgnnnnnnnnnnnnncaaatatgaa |
228 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
19675492 |
agagatttattggattatcaaatgatacatagtgcgatacagtcaaaacaaggtattctatatatatattagaattgaagaaaaaaag---aaatatgaa |
19675588 |
T |
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| Q |
229 |
tagatacctagaaaacaagttaaaacccattaatg |
263 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
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| T |
19675589 |
tagatacctaaaaaacaagttaaaacccattaatg |
19675623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 197
Target Start/End: Complemental strand, 19679917 - 19679870
Alignment:
| Q |
150 |
atgatacatagtgcgatacagtcaaaacaaggtattctatatatatat |
197 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19679917 |
atgatacatagtgcgatacagtcaaaacaaggtattctatatatatat |
19679870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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