View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14066_low_6 (Length: 262)
Name: NF14066_low_6
Description: NF14066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14066_low_6 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 13228034 - 13227804
Alignment:
| Q |
16 |
ataccaaaaattcctcgttatttatatttattcttaagcaagtccccaaaagtgcttagttgagccatcatttctatttcgtctttcgtttcgatagata |
115 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13228034 |
ataccaaacattcctcgttatttatatttattcttaagcaagtcccaaaaagtccttagttgagccatcatttctatttcgtctttcgtttcgatagata |
13227935 |
T |
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| Q |
116 |
tatcgattaattccgattctttttctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatagatcctgctcatg |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
13227934 |
tatcgattaattccgattctttttctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatagaccctgctcatg |
13227835 |
T |
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| Q |
216 |
gattaacgaaaatgtgcagaagctctatttg |
246 |
Q |
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|||||||||||||||||| |||||||||||| |
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| T |
13227834 |
gattaacgaaaatgtgcaaaagctctatttg |
13227804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 132 - 246
Target Start/End: Original strand, 53883670 - 53883778
Alignment:
| Q |
132 |
ttctttttctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatagatcctgctcatggattaacgaaaatgtg |
231 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||| |
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| T |
53883670 |
ttctttttctattgattcttttccaattat------ggatggatccatacataggtctatgtgtgtgtatagatcctgctcattgattaatgaaaatgtg |
53883763 |
T |
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| Q |
232 |
cagaagctctatttg |
246 |
Q |
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| T |
53883764 |
caaaagatctatttg |
53883778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 47522820 - 47522608
Alignment:
| Q |
16 |
ataccaaaaattcctcgttatttatatttattcttaagcaagtccccaaaagtgcttagttgagccatcatttctatttcgtctttcgtttcgatagata |
115 |
Q |
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|||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
47522820 |
ataccaaacattcctggttatttatatttattcttaagcaagtccccaaaagtgtttagttgagccatcatttctatttcgtctttcgtttcgataaata |
47522721 |
T |
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| Q |
116 |
tatcgattaattccgattctttttctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatagatcctgctcatg |
215 |
Q |
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| T |
47522720 |
tatcgattaattccgattctttttctatcgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtacatagatcctactcatg |
47522621 |
T |
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| Q |
216 |
gattaacgaaaat |
228 |
Q |
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| T |
47522620 |
gattaacgaaaat |
47522608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 40 - 246
Target Start/End: Complemental strand, 42680336 - 42680136
Alignment:
| Q |
40 |
tatttattcttaagcaagtccccaaaagtgcttagttgagccatcatttctatttcgtctttcgtttcgatagatatatcgattaattccgattcttttt |
139 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42680336 |
tatttattcttaagcaagtccccaaaagtgcttagttgagccatcatttctattttgtctttcgtttccatagatatatcgattaattccgattcttttt |
42680237 |
T |
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| Q |
140 |
ctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatagatcctgctcatggattaacgaaaatgtgcagaagct |
239 |
Q |
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| T |
42680236 |
ctattgattcttttccaa------ttatgtatggatccatacataggtctacgtgtgtatatagatcctactcatggattaacgaaaatgtgcaaaagct |
42680143 |
T |
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| Q |
240 |
ctatttg |
246 |
Q |
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| T |
42680142 |
ctatttg |
42680136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 40 - 161
Target Start/End: Original strand, 35934647 - 35934768
Alignment:
| Q |
40 |
tatttattcttaagcaagtccccaaaagt-gcttagttgagccatcatttctatttcgtctttcgtttcgatagatatatcgattaattccgattctttt |
138 |
Q |
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||||||||||||||||||||| ||||||| | |||||| |||||||| |||||||| |||||||||||||||||||||||| ||||||| |||| |||| |
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| T |
35934647 |
tatttattcttaagcaagtcctcaaaagttggttagttaagccatcaattctattt-gtctttcgtttcgatagatatatctattaattatgattatttt |
35934745 |
T |
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| Q |
139 |
tctattgattcttttccaattat |
161 |
Q |
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| T |
35934746 |
tctattgattcttttccaattat |
35934768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 246
Target Start/End: Complemental strand, 192063 - 192017
Alignment:
| Q |
200 |
atagatcctgctcatggattaacgaaaatgtgcagaagctctatttg |
246 |
Q |
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| T |
192063 |
atagattctgttcatggattaacgaaaatgtgcaagagctctatttg |
192017 |
T |
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