View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14067_high_1 (Length: 593)
Name: NF14067_high_1
Description: NF14067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14067_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 18 - 580
Target Start/End: Original strand, 43672552 - 43673111
Alignment:
| Q |
18 |
aagtacgtgccttttctacttgaactattattcaaatttggcatgtgtgttgactacacaaaacctttgtttctagtgggggactactagggcaatacaa |
117 |
Q |
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| T |
43672552 |
aagtacgtgccttttctacttgaactattattcaaatttggcatgtgtgttgactacacaaaacctttgtttctagtgggggactactagggcaatacaa |
43672651 |
T |
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| Q |
118 |
tttcacnnnnnnnctttcctccttaatttcatttcatcctaatactctattatttattgtttcatggatcgacaaataataattgactattggtaataat |
217 |
Q |
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| T |
43672652 |
tttcactttttttctttcctccttaatttcatttcatcctaatactctattatttattgtttcatggatcgacaaataataattgactattggtaat--- |
43672748 |
T |
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| Q |
218 |
tattataaactccttttaaataagcaaagttaaattgtaggggaattaaataatcatgaattgcaaaggcaggattccattttatgtgatagttacttat |
317 |
Q |
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| T |
43672749 |
tataataaactccttttaaataagcaaagttaaattgtaggggaattaaataatcatgaattgcaaaggcaagattccattttatttgatagtttcttat |
43672848 |
T |
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| Q |
318 |
aagttaaggatccattatgattgttgacttggtttcataatatatggtccttcattccttcctcactctttatttttatcactatttagtccatatgagt |
417 |
Q |
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| T |
43672849 |
aacttacggatccatttttatggttgacttggtttcataatatatggtccttcattccttcctcactctttatttttatcactatttagtccatatgagt |
43672948 |
T |
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| Q |
418 |
ttggtagggaagaaacttaaaagagtatgacagatgttgtgtcgatatttggtggtttagactttagtatagtatttgatgagaaacaatgttattatta |
517 |
Q |
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| T |
43672949 |
ttggtagggaagaaacttaaaagagtatgacagatgttgtgtcgatatttggtggtttagactttagtatagtatttgatgagaaacagtgttattatta |
43673048 |
T |
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| Q |
518 |
acttcatcagttttgatttcattagggttctttattaagatcttcaactctgctgtttgatat |
580 |
Q |
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| T |
43673049 |
acttcatcagttttgatttcattagggttctttattaagatcttcaactctgctgtttgatat |
43673111 |
T |
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