View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14067_low_3 (Length: 249)
Name: NF14067_low_3
Description: NF14067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14067_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 40671241 - 40671466
Alignment:
| Q |
16 |
atttataccctaaatattttcttattttaacgttttgtaccttcactatcatgaagaatatatatatacttttgatagagttaannnnnnngagtttgtt |
115 |
Q |
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| T |
40671241 |
atttataccctaaatattttcttattttaacgttttgtaccttcactatcatgaagaatatatatatacttttgatagagttaatttttt-gagtttgtt |
40671339 |
T |
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| Q |
116 |
ggaatttgaatttgttaggttggatggaatttgatttgcattcatcattttatatggagtggtgttgatgtgataaatggtggggtcacaggttaggaca |
215 |
Q |
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| T |
40671340 |
ggaatttgaatttgttaggttggatggaatttgatttgcattcatcattttatatggagtggtgttgatgtgataaatggtggggtcacaggttaggaca |
40671439 |
T |
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| Q |
216 |
agttgagagtgctaggaagtacctttg |
242 |
Q |
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| T |
40671440 |
agttgagagtgctaggaagtacctttg |
40671466 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 32333447 - 32333397
Alignment:
| Q |
192 |
atggtggggtcacaggttaggacaagttgagagtgctaggaagtacctttg |
242 |
Q |
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| T |
32333447 |
atggtggtgttacaggttaggacaagttgagaatgctaggaagcacctttg |
32333397 |
T |
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