View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14068_high_3 (Length: 333)
Name: NF14068_high_3
Description: NF14068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14068_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 20 - 322
Target Start/End: Original strand, 42089013 - 42089310
Alignment:
| Q |
20 |
ggtaacacgatgctatactaaattaatatattttttgttctgttaactttctctttttgatctccatcattgtctgcatattgatcgatattaatgaatt |
119 |
Q |
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| T |
42089013 |
ggtaacacgatgctatactaaattaatatattttttgttctgttaactttctctttttgatctccattattgtctgcatattgatcgatattaatgaatt |
42089112 |
T |
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| Q |
120 |
accagggaccagaattgaccatagtacttttgtgtagtatgatacataccactatctattgcatgagatattgtacagaaagtaaatagtactatatgca |
219 |
Q |
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| T |
42089113 |
accagg-accagaattgaccatagtacttttgtgtagtatgatgcataccactat----tgcatgagatattatacagaaagtaaatagtactatatgca |
42089207 |
T |
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| Q |
220 |
ttttcatgttttcagggcattcaaatttaatttagtgattatcatgatttggttatttcgttaatgtaaagatacatgaaagggaacaagaaataattat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42089208 |
ttttcatgttttcagggcattcaaatttaatttagtgattatcatgatttggttatttcgttaatgtaaagatacatgaaagggaacaagaaatcattat |
42089307 |
T |
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