View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14068_low_2 (Length: 414)
Name: NF14068_low_2
Description: NF14068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14068_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 382
Target Start/End: Original strand, 41735909 - 41736273
Alignment:
| Q |
18 |
gttattactattgtgattaggcttgtgatcatgactctttttgtgagaattattatgagtcttcagattttcttggtagctaaagccttcgccttgacag |
117 |
Q |
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| T |
41735909 |
gttattactattgtgattaggcttgtgatcataactctttttgtgagaattattatgagtcttcagattttcttggtagctaaagccttcgccttgacag |
41736008 |
T |
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| Q |
118 |
ccttgctcttctttcagttggtaccttcgaaactcacgtggaaaataatatttttcatgtttgaattcttccaacagtttgtggtaattgttgattgaca |
217 |
Q |
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| T |
41736009 |
ccttgctcttctttcagttggtaccttcgaaactcacgtggaaaataatatttttcatgtttgaattcttccaacagtttgtggtaattgttgattgaca |
41736108 |
T |
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| Q |
218 |
tcttcattgtttaaggcgtgatcattttcagcgtaaaacattaaccacgggatttaatacacccttctcaatgaaaccgataaaacataactggtaagaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41736109 |
tcttcattgtttaaggcgtgatcattttcagcgtaaaacattaaccacgggatttaatacacccttctcaatgaaaccgataaaacataactggtaagaa |
41736208 |
T |
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| Q |
318 |
ttaataatcttttatcaagaaaatgaaactcggaattctgtgtatcggtagtgaaaattagtatg |
382 |
Q |
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| T |
41736209 |
ttaataatcttttatcaagaaaatgaaactcggaattctgtgtatcggtagtgaaaattagtatg |
41736273 |
T |
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