View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14068_low_3 (Length: 413)

Name: NF14068_low_3
Description: NF14068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14068_low_3
NF14068_low_3
[»] chr8 (6 HSPs)
chr8 (121-406)||(5032688-5032971)
chr8 (121-188)||(42200652-42200719)
chr8 (30-76)||(5032976-5033022)
chr8 (123-169)||(8687872-8687918)
chr8 (121-175)||(29546897-29546951)
chr8 (121-157)||(17521289-17521325)
[»] chr3 (8 HSPs)
chr3 (128-188)||(1456530-1456590)
chr3 (124-188)||(26983380-26983444)
chr3 (121-188)||(38387976-38388043)
chr3 (121-188)||(55066590-55066657)
chr3 (121-175)||(10922311-10922365)
chr3 (123-177)||(35126270-35126324)
chr3 (123-175)||(1111844-1111896)
chr3 (121-177)||(17588366-17588422)
[»] chr2 (6 HSPs)
chr2 (122-187)||(30089054-30089119)
chr2 (122-187)||(30125658-30125723)
chr2 (121-167)||(1238166-1238212)
chr2 (121-187)||(15427696-15427762)
chr2 (122-188)||(24592836-24592902)
chr2 (140-181)||(32861915-32861956)
[»] chr1 (7 HSPs)
chr1 (122-175)||(2884451-2884504)
chr1 (121-188)||(16033440-16033507)
chr1 (121-188)||(30382500-30382567)
chr1 (121-188)||(34766864-34766931)
chr1 (123-188)||(37185655-37185720)
chr1 (121-177)||(32007598-32007654)
chr1 (140-188)||(34632192-34632240)
[»] chr5 (5 HSPs)
chr5 (121-172)||(781867-781918)
chr5 (121-188)||(6489011-6489078)
chr5 (121-171)||(11310458-11310508)
chr5 (123-180)||(40445989-40446046)
chr5 (124-184)||(3389169-3389229)
[»] chr4 (3 HSPs)
chr4 (121-188)||(12698601-12698667)
chr4 (121-171)||(18635534-18635584)
chr4 (123-175)||(7248342-7248394)
[»] scaffold0016 (1 HSPs)
scaffold0016 (121-175)||(99041-99095)
[»] scaffold0008 (1 HSPs)
scaffold0008 (121-154)||(119573-119606)
[»] chr7 (10 HSPs)
chr7 (139-188)||(6556155-6556204)
chr7 (127-188)||(16537526-16537587)
chr7 (127-188)||(16577850-16577911)
chr7 (127-188)||(16587751-16587812)
chr7 (127-188)||(16628075-16628136)
chr7 (121-150)||(43753191-43753220)
chr7 (121-185)||(1079685-1079749)
chr7 (139-183)||(39919259-39919303)
chr7 (121-173)||(42753432-42753484)
chr7 (123-175)||(43680993-43681045)
[»] chr6 (3 HSPs)
chr6 (127-188)||(14049874-14049935)
chr6 (122-187)||(33824886-33824951)
chr6 (127-175)||(14918303-14918351)


Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 121 - 406
Target Start/End: Complemental strand, 5032971 - 5032688
Alignment:
Q  121 gcttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccaccacnnnnnnnnngaaataaacgcaaatacttttat 220  Q
    |||||||||||||| ||||||||||||||||||||||||||||| || ||||||| | ||||||||||         |||||||||||||||||||||||    
T  5032971 gcttaactcagttggttgggacaatgtataatatatacatgatccggagttcaaaccccggccaccacaaaaaaat-gaaataaacgcaaatacttttat 5032873  T
Q  221 acataaaattgaaggtctttcatgtcttaagctgtgatactattctcttaccttaacttctaaatttttgtaacnnnnnnnnnttaacaatactcatagc 320  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||         |||||||||||||||||    
T  5032872 acataaaattgaaggtctttcatgccttaagctgtcatactattctcttaccttaacttctaaatttttgtaacaaaaaaaa-ttaacaatactcatagc 5032774  T
Q  321 tttatatgcacctttaccctaattcaaacacaaaagcctagattttatagttgtgtgtgcaaatttaaatgatataccttcatttc 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  5032773 tttatatgcacctttaccctaattcaaacacaaaagcctagattttatagttgtgtgtgcaaatttaaatgatatacgttcttttc 5032688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 121 - 188
Target Start/End: Complemental strand, 42200719 - 42200652
Alignment:
Q  121 gcttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccaccac 188  Q
    ||||| |||||||||| ||||||||||||||||||| |||| |||| |||||||| || || ||||||    
T  42200719 gcttagctcagttgatagggacaatgtataatatatgcatggtctgaggttcaaaccttggtcaccac 42200652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 5033022 - 5032976
Alignment:
Q  30 attcgagaggtatgaggtttgaattatgtgagtgcccttgaaataaa 76  Q
    |||||||||||||   |||||||||||| ||||||||||||||||||    
T  5033022 attcgagaggtatcgagtttgaattatgcgagtgcccttgaaataaa 5032976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 8687872 - 8687918
Alignment:
Q  123 ttaactcagttgattgggacaatgtataatatatacatgatctgggg 169  Q
    |||||||| ||| | |||||||||||||||||||||| |||||||||    
T  8687872 ttaactcaattggtagggacaatgtataatatatacaagatctgggg 8687918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 175
Target Start/End: Original strand, 29546897 - 29546951
Alignment:
Q  121 gcttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaa 175  Q
    |||||||||||||||| ||||||||  ||||||||| || | |||||||||||||    
T  29546897 gcttaactcagttgatagggacaatagataatatatgcaaggtctggggttcaaa 29546951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 157
Target Start/End: Complemental strand, 17521325 - 17521289
Alignment:
Q  121 gcttaactcagttgattgggacaatgtataatatata 157  Q
    ||||||||||||||||  |||||||||||||||||||    
T  17521325 gcttaactcagttgataaggacaatgtataatatata 17521289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 1456590 - 1456530
Alignment:
Q  128 tcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccaccac 188  Q
    ||||||||| ||||||||||||||||||| || | |||| |||||||| ||||||||||||    
T  1456590 tcagttgatagggacaatgtataatatatgcaaggtctgaggttcaaaactcggccaccac 1456530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 26983380 - 26983444
Alignment:
Q  124 taactcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccaccac 188  Q
    |||||||||||||| ||||||||||||||||||  | | |||||| ||| ||||||| |||||||    
T  26983380 taactcagttgattaggacaatgtataatatatgtaaggtctgggattcgaatctcgaccaccac 26983444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 121 - 188
Target Start/End: Original strand, 38387976 - 38388043
Alignment:
Q  121 gcttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccaccac 188  Q
    ||||| |||||||||| | ||||||| ||||||||| || |||||| || ||||||||||| ||||||    
T  38387976 gcttagctcagttgatagtgacaatgcataatatatgcaagatctgaggctcaaatctcggtcaccac 38388043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 121 - 188
Target Start/End: Complemental strand, 55066657 - 55066590
Alignment:
Q  121 gcttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccaccac 188  Q
    ||||| |||||||| |  ||| |||| ||||||||| |||| ||||||||||||||| ||||||||||    
T  55066657 gcttagctcagttggtacggataatgcataatatatgcatggtctggggttcaaatcccggccaccac 55066590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 175
Target Start/End: Complemental strand, 10922365 - 10922311
Alignment:
Q  121 gcttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaa 175  Q
    |||||||||||||| | ||||||||| ||||||||| || |||| ||||||||||    
T  10922365 gcttaactcagttggtagggacaatgcataatatatgcaagatccggggttcaaa 10922311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 177
Target Start/End: Complemental strand, 35126324 - 35126270
Alignment:
Q  123 ttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaatc 177  Q
    |||||||||||| | |||| |||| ||||||||| || |||||||||||||||||    
T  35126324 ttaactcagttggtagggataatgcataatatatgcaagatctggggttcaaatc 35126270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 1111896 - 1111844
Alignment:
Q  123 ttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaa 175  Q
    |||||||||||||| ||||||||  ||||||||| || | |||||||||||||    
T  1111896 ttaactcagttgatagggacaatacataatatatgcaaggtctggggttcaaa 1111844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 17588366 - 17588422
Alignment:
Q  121 gcttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaatc 177  Q
    |||||||||||||| |  |||||||| ||||||||| || |||||||||||| ||||    
T  17588366 gcttaactcagttggtaaggacaatgcataatatatgcaagatctggggttcgaatc 17588422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 30089054 - 30089119
Alignment:
Q  122 cttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccacca 187  Q
    |||| |||||||| | ||||||||| |||||||||||| | || |||||||||| |||||||||||    
T  30089054 cttagctcagttggtagggacaatgcataatatatacaaggtccggggttcaaacctcggccacca 30089119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 30125658 - 30125723
Alignment:
Q  122 cttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccacca 187  Q
    |||| |||||||| | ||||||||| |||||||||||| | || |||||||||| |||||||||||    
T  30125658 cttagctcagttggtagggacaatgcataatatatacaaggtccggggttcaaacctcggccacca 30125723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 167
Target Start/End: Original strand, 1238166 - 1238212
Alignment:
Q  121 gcttaactcagttgattgggacaatgtataatatatacatgatctgg 167  Q
    |||||||||| ||||| ||||||||| |||||||||||| |||||||    
T  1238166 gcttaactcaattgatagggacaatgcataatatatacaagatctgg 1238212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 187
Target Start/End: Original strand, 15427696 - 15427762
Alignment:
Q  121 gcttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccacca 187  Q
    ||||| ||||||||||  ||||||| |||||||||| || | ||| |||||||||||| ||||||||    
T  15427696 gcttagctcagttgatatggacaatatataatatatgcaaggtctagggttcaaatcttggccacca 15427762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 188
Target Start/End: Complemental strand, 24592902 - 24592836
Alignment:
Q  122 cttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccaccac 188  Q
    |||| |||||||| | ||||||||| ||||||||| || | ||||||||||||| | ||||||||||    
T  24592902 cttagctcagttggtagggacaatgcataatatatgcaaggtctggggttcaaaccccggccaccac 24592836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 32861915 - 32861956
Alignment:
Q  140 gacaatgtataatatatacatgatctggggttcaaatctcgg 181  Q
    |||||||||||||||||||| ||||| |||||| ||||||||    
T  32861915 gacaatgtataatatatacaagatctagggttcgaatctcgg 32861956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 122 - 175
Target Start/End: Complemental strand, 2884504 - 2884451
Alignment:
Q  122 cttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaa 175  Q
    |||||||||||||||  |||||||| |||||||||||| |||| ||||||||||    
T  2884504 cttaactcagttgatatggacaatgcataatatatacaagatcgggggttcaaa 2884451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 121 - 188
Target Start/End: Complemental strand, 16033507 - 16033440
Alignment:
Q  121 gcttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccaccac 188  Q
    |||| ||||||||||| ||||||||| ||||||||| || | |||||||||||||   ||||||||||    
T  16033507 gcttgactcagttgatagggacaatgcataatatatgcaaggtctggggttcaaactccggccaccac 16033440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 121 - 188
Target Start/End: Original strand, 30382500 - 30382567
Alignment:
Q  121 gcttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccaccac 188  Q
    |||||||||||||| || |||||||| |||| |||| || | ||||| ||||||| ||||||||||||    
T  30382500 gcttaactcagttggtttggacaatgcataaaatatgcaaggtctggcgttcaaacctcggccaccac 30382567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 121 - 188
Target Start/End: Original strand, 34766864 - 34766931
Alignment:
Q  121 gcttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccaccac 188  Q
    |||||||||||||| |  ||||||||||||||| || || | |||||||||| || ||||||||||||    
T  34766864 gcttaactcagttggtatggacaatgtataatacatgcaaggtctggggttcgaacctcggccaccac 34766931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 188
Target Start/End: Complemental strand, 37185720 - 37185655
Alignment:
Q  123 ttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccaccac 188  Q
    |||||||||||||| ||||||||| || | |||| |||  ||| || |||||||||||||||||||    
T  37185720 ttaactcagttgatagggacaatgcatcaaatatgcattgtctaggattcaaatctcggccaccac 37185655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 32007654 - 32007598
Alignment:
Q  121 gcttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaatc 177  Q
    |||||||||||||  ||||||||||| |||| ||||||| | || ||||||||||||    
T  32007654 gcttaactcagttcgttgggacaatgcataaaatatacaaggtccggggttcaaatc 32007598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 34632192 - 34632240
Alignment:
Q  140 gacaatgtataatatatacatgatctggggttcaaatctcggccaccac 188  Q
    ||||||||||||||||| || |||| | |||||||||| ||||||||||    
T  34632192 gacaatgtataatatatgcaagatccgaggttcaaatcccggccaccac 34632240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 781867 - 781918
Alignment:
Q  121 gcttaactcagttgattgggacaatgtataatatatacatgatctggggttc 172  Q
    |||||||||||||||| |||||||||||||| |||| || | ||||||||||    
T  781867 gcttaactcagttgatagggacaatgtataaaatatgcaaggtctggggttc 781918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 121 - 188
Target Start/End: Original strand, 6489011 - 6489078
Alignment:
Q  121 gcttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccaccac 188  Q
    ||||| |||||||| | ||||||||| ||||||||| || | ||||||||||||| | ||||||||||    
T  6489011 gcttagctcagttggtagggacaatgcataatatatgcaaggtctggggttcaaaccccggccaccac 6489078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 11310508 - 11310458
Alignment:
Q  121 gcttaactcagttgattgggacaatgtataatatatacatgatctggggtt 171  Q
    ||||| |||||||| || |||||||||||||||||| || |||||||||||    
T  11310508 gcttagctcagttggtttggacaatgtataatatatgcaagatctggggtt 11310458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 40445989 - 40446046
Alignment:
Q  123 ttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcg 180  Q
    ||||||||||||||  |||||||| ||||||||| || | |||| |||||||||||||    
T  40445989 ttaactcagttgataaggacaatgcataatatatgcaaggtctgaggttcaaatctcg 40446046  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 3389169 - 3389229
Alignment:
Q  124 taactcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggcca 184  Q
    ||||||||||| |  |||||||| ||||||||| || |||||||||||||||  |||||||    
T  3389169 taactcagttggtatggacaatgcataatatatgcaagatctggggttcaaacatcggcca 3389229  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 121 - 188
Target Start/End: Original strand, 12698601 - 12698667
Alignment:
Q  121 gcttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccaccac 188  Q
    ||||| ||||||||||| |||||||| ||||||||| || | |||||||||| ||||| |||||||||    
T  12698601 gcttagctcagttgatttggacaatgcataatatatgcaaggtctggggttcgaatct-ggccaccac 12698667  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 18635534 - 18635584
Alignment:
Q  121 gcttaactcagttgattgggacaatgtataatatatacatgatctggggtt 171  Q
    ||||||||||||||||  |||||||| |||||||||||| | |||||||||    
T  18635534 gcttaactcagttgataaggacaatgcataatatatacaaggtctggggtt 18635584  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 7248342 - 7248394
Alignment:
Q  123 ttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaa 175  Q
    |||||||||||||||||||||||| |||| |||| || | ||| |||||||||    
T  7248342 ttaactcagttgattgggacaatgcataaaatatgcaaggtctagggttcaaa 7248394  T

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Target: scaffold0016 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 175
Target Start/End: Original strand, 99041 - 99095
Alignment:
Q  121 gcttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaa 175  Q
    |||| ||||||||||| ||||||||| ||||||||| || | |||||||||||||    
T  99041 gcttgactcagttgatagggacaatgcataatatatgcaaggtctggggttcaaa 99095  T

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Target: scaffold0008 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 154
Target Start/End: Original strand, 119573 - 119606
Alignment:
Q  121 gcttaactcagttgattgggacaatgtataatat 154  Q
    |||||||||||||||| |||||||||||||||||    
T  119573 gcttaactcagttgatagggacaatgtataatat 119606  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 6556155 - 6556204
Alignment:
Q  139 ggacaatgtataatatatacatgatctggggttcaaatctcggccaccac 188  Q
    ||||||||||||||||||  | ||||||| ||||||| ||||||||||||    
T  6556155 ggacaatgtataatatatgtaagatctggtgttcaaacctcggccaccac 6556204  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 16537587 - 16537526
Alignment:
Q  127 ctcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccaccac 188  Q
    |||||||| | |||| |||| |||||||||||| | ||||||||||||| ||||| ||||||    
T  16537587 ctcagttggtagggataatgcataatatatacaaggtctggggttcaaacctcggtcaccac 16537526  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 16577911 - 16577850
Alignment:
Q  127 ctcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccaccac 188  Q
    |||||||| | ||||||||  ||||||||| || | ||||||||||||| ||||||||||||    
T  16577911 ctcagttggtagggacaatacataatatatgcaaggtctggggttcaaacctcggccaccac 16577850  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 188
Target Start/End: Original strand, 16587751 - 16587812
Alignment:
Q  127 ctcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccaccac 188  Q
    |||||||| | ||||||||  ||||||||| || | ||||||||||||| ||||||||||||    
T  16587751 ctcagttggtagggacaatacataatatatgcaaggtctggggttcaaacctcggccaccac 16587812  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 188
Target Start/End: Original strand, 16628075 - 16628136
Alignment:
Q  127 ctcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccaccac 188  Q
    |||||||| | |||| |||| |||||||||||| | ||||||||||||| ||||| ||||||    
T  16628075 ctcagttggtagggataatgcataatatatacaaggtctggggttcaaacctcggtcaccac 16628136  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 150
Target Start/End: Complemental strand, 43753220 - 43753191
Alignment:
Q  121 gcttaactcagttgattgggacaatgtata 150  Q
    ||||||||||||||||||||||||||||||    
T  43753220 gcttaactcagttgattgggacaatgtata 43753191  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 1079749 - 1079685
Alignment:
Q  121 gcttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccac 185  Q
    |||||||||||||  |||| |||||| |||| |||| || | || ||||||||||||||||||||    
T  1079749 gcttaactcagttagttggaacaatgcataaaatatgcaaggtccggggttcaaatctcggccac 1079685  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 39919259 - 39919303
Alignment:
Q  139 ggacaatgtataatatatacatgatctggggttcaaatctcggcc 183  Q
    |||||||| ||||||||| || | |||||||||||||||||||||    
T  39919259 ggacaatgaataatatatgcaaggtctggggttcaaatctcggcc 39919303  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 42753484 - 42753432
Alignment:
Q  121 gcttaactcagttgattgggacaatgtataatatatacatgatctggggttca 173  Q
    |||||||||| ||| | |||||||||||||||||||||| | |||| ||||||    
T  42753484 gcttaactcaattggtagggacaatgtataatatatacaaggtctgaggttca 42753432  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 43681045 - 43680993
Alignment:
Q  123 ttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaa 175  Q
    |||||||||||||||||||||||| |||| |||| || | ||| |||||||||    
T  43681045 ttaactcagttgattgggacaatgcataaaatatgcaaggtctagggttcaaa 43680993  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 14049935 - 14049874
Alignment:
Q  127 ctcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccaccac 188  Q
    |||||||||||| ||||||| ||||||||| || | |||| |||||||||  ||||||||||    
T  14049935 ctcagttgattgagacaatgcataatatatgcaaggtctgaggttcaaattccggccaccac 14049874  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 33824886 - 33824951
Alignment:
Q  122 cttaactcagttgattgggacaatgtataatatatacatgatctggggttcaaatctcggccacca 187  Q
    |||| ||||||||||  |||||||| ||||||||| || | || |||||||||| |||||||||||    
T  33824886 cttagctcagttgataaggacaatgcataatatatgcaaggtccggggttcaaacctcggccacca 33824951  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 14918351 - 14918303
Alignment:
Q  127 ctcagttgattgggacaatgtataatatatacatgatctggggttcaaa 175  Q
    |||||||| | ||||||||| |||||||||||| | |||||||||||||    
T  14918351 ctcagttggtagggacaatgcataatatatacaaggtctggggttcaaa 14918303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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