View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14068_low_4 (Length: 378)
Name: NF14068_low_4
Description: NF14068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14068_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 90 - 360
Target Start/End: Complemental strand, 30665977 - 30665707
Alignment:
| Q |
90 |
tcactaagactcttacaagttcatcccatattgacctacatttagggatatagcagctcttcaacccaccataaatgagaattttcaagagatacaatga |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30665977 |
tcactaagactcttacaagttcatcccatattgacctacatttagggatatagcagctcttcaacccaccataaatgagaattttcaagagatacaatga |
30665878 |
T |
|
| Q |
190 |
aggtacaagaaattgacttcagcaatataccataatttctacccttttgagtttcttctctcaacctgtgagaagatctctcaagaagataagagggaaa |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30665877 |
aggtacaagaaattgacttcagcaatataccataatttctacccttttgagtttcttctctcaacctgtgagaagatctctcaagaagataagagggaaa |
30665778 |
T |
|
| Q |
290 |
ccttgaattcttcctttaatgaaatatctttaaccattgtatttagaaagtgtttcttagccataacttct |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30665777 |
ccttgaattcttcctttaatgaaatatctttaaccattgtatttagaaagtgtttcttagccataacttct |
30665707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University