View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14069_low_1 (Length: 236)
Name: NF14069_low_1
Description: NF14069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14069_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 108 - 214
Target Start/End: Original strand, 5890014 - 5890120
Alignment:
| Q |
108 |
tattagagcaagaagaacaacaaagcaaaaccattccagctgttacttgagatacaagttatatagcttaatcatgtaattagcttataattagagagta |
207 |
Q |
| |
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||||||||||||||||||||||||||||| |||||| | || |||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
5890014 |
tattagagcaagaagaacaacaaagcaaagccattcaatctattacttgagatacaagttatctaatttaatcatgtaattagcttataattagagagta |
5890113 |
T |
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| Q |
208 |
actactt |
214 |
Q |
| |
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||||||| |
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| T |
5890114 |
actactt |
5890120 |
T |
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Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 108 - 213
Target Start/End: Original strand, 46677345 - 46677450
Alignment:
| Q |
108 |
tattagagcaagaagaacaacaaagcaaaaccattccagctgttacttgagatacaagttatatagcttaatcatgtaattagcttataattagagagta |
207 |
Q |
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|||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
46677345 |
tattagagcaagaagaacaacaaagccaagatattccagctgttacttgagatactagttatatagtttaatcttgtaattagcttataattagagagta |
46677444 |
T |
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| Q |
208 |
actact |
213 |
Q |
| |
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|||||| |
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|
| T |
46677445 |
actact |
46677450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 106 - 213
Target Start/End: Original strand, 16984403 - 16984510
Alignment:
| Q |
106 |
actattagagcaagaagaacaacaaagcaaaaccattccagctgttacttgagatacaagttatatagcttaatcatgtaattagcttataattagagag |
205 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||| |||||| |||||||||| ||||||||||||| |
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| T |
16984403 |
actattagagcaagaagaacaacaaagcaaagatattccagctgttacttgagattctagttatatagtttaatcttgtaattagcatataattagagag |
16984502 |
T |
|
| Q |
206 |
taactact |
213 |
Q |
| |
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||| |||| |
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|
| T |
16984503 |
taattact |
16984510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 108 - 213
Target Start/End: Original strand, 16989104 - 16989209
Alignment:
| Q |
108 |
tattagagcaagaagaacaacaaagcaaaaccattccagctgttacttgagatacaagttatatagcttaatcatgtaattagcttataattagagagta |
207 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||||||||||| | |||||||||| |||||| |||||||||| ||||||||||||||| |
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| T |
16989104 |
tattagagcaagaagaacaacaaagccaagatattccagctgttacttgagattctagttatatagtttaatcttgtaattagcatataattagagagta |
16989203 |
T |
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| Q |
208 |
actact |
213 |
Q |
| |
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| |||| |
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|
| T |
16989204 |
attact |
16989209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 108 - 206
Target Start/End: Complemental strand, 21806850 - 21806752
Alignment:
| Q |
108 |
tattagagcaagaagaacaacaaagcaaaaccattccagctgttacttgagatacaagttatatagcttaatcatgtaattagcttataattagagagt |
206 |
Q |
| |
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|||||||||||||||||||||||||| || |||||| |||||||||||||| | |||||||||| |||||| |||||||||| |||||||||||||| |
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| T |
21806850 |
tattagagcaagaagaacaacaaagccaagatattccaactgttacttgagattctagttatatagtttaatcttgtaattagcatataattagagagt |
21806752 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 141 - 206
Target Start/End: Complemental strand, 21811497 - 21811432
Alignment:
| Q |
141 |
ttccagctgttacttgagatacaagttatatagcttaatcatgtaattagcttataattagagagt |
206 |
Q |
| |
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|||||||||||||||||||| | |||||||||| |||||| |||||||||| |||||||||||||| |
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| T |
21811497 |
ttccagctgttacttgagattctagttatatagtttaatcttgtaattagcatataattagagagt |
21811432 |
T |
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