View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1406_high_1 (Length: 953)
Name: NF1406_high_1
Description: NF1406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1406_high_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 796; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 796; E-Value: 0
Query Start/End: Original strand, 29 - 877
Target Start/End: Complemental strand, 2851132 - 2850284
Alignment:
| Q |
29 |
agaaactatgtataggttttaacaagaaaactggaaaaatagtaatttgcaaccccctatcaatttggtgtttggataagaaccgctagataaaccagat |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2851132 |
agaaactatgtataggttttaacaagaaaactggaaaaatagtaatttgcaaccccctatcaatttggtgtttggataagaaccgctagataaaccagat |
2851033 |
T |
|
| Q |
129 |
aaactttgatttacatatatgtgaataaaacttactaaaaaagagtctnnnnnnncatatagctagttaacatatatcaaggtattctattccagcaagc |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2851032 |
aaactttgatttacatatatgtgaataaaacttactaaaaaagagtctaaaaaaacatatagctagttaacatatatcaaggtattctattccagcaagc |
2850933 |
T |
|
| Q |
229 |
atacgaagactttgcaagcaagtttaacaggttttaaggctagaaatacaatgttttgattcaaaaagtactcctagtaagtgttttttctaacttgttc |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2850932 |
atacgaagactttgcaagcaagtttaacaggttttaaggctagaaatacaatgttttgattcaaaaagtactccttgtaagtgttttttctaacttgttc |
2850833 |
T |
|
| Q |
329 |
tacagctgaaacttcacacacaggcacttgaagagaaaatgaaaattataccttccattagatttcttatttacttagtagagctatgtttgactgagtt |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2850832 |
tacagctgaaacttcacacacaggcacttgaagagaaaatgaaaattataacttccattagatttcttatttacttagtagagctatgtttgactgagtt |
2850733 |
T |
|
| Q |
429 |
tatcaatcaatcttcgaaactgaatataagcagtggcaatttcacctactaaatatcagagcacaaaaccaatacacaaaaatacaagtaattgagaaat |
528 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2850732 |
tatcaatcaatcttcgaaactgaatataagcagtggcaatttcacctactaaatatcagagcacaaaaccaatacacaaaaataccagtaattgagaaat |
2850633 |
T |
|
| Q |
529 |
tagaggtaacctcatcaatgaccttcactaagtagttaataaagcttcaaggctttgatctctgcacaaacagaatcaaccaacaaaaattcaaaaagaa |
628 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2850632 |
tagaggtaacctcatcaatgacattcactaagtagttaataaagcttcaaggctttgatctcagcacaaacagaatcaaccaacaaaaattcaaaaagaa |
2850533 |
T |
|
| Q |
629 |
attatagaacatgttgaaatttccagaacagtgttcaatatagcaatgctgcaacatacaacttgatagtgtttgaagaaatagtgctacaactaagaca |
728 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2850532 |
attatagaacatgttgaaatttccagaacagtgttcaatatagcaatgctacaacatacaacttgatagtgtttgaagaaatagtgctacaactaagaca |
2850433 |
T |
|
| Q |
729 |
aatcattttaaatccctcaaaagtattttacctttttacaatctccaactcaaacacactctaagagaatgtatcctctcgatctccctcggcgattgtc |
828 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
2850432 |
aatcattttaaatccctcaaaagtattttacctttttacaatctccaactcaaacacactctaagagaatgtatcctctcaatctccctaggcgattgtc |
2850333 |
T |
|
| Q |
829 |
tccccttcctccatattgctgaactctaagaaatgggttggcctatgat |
877 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2850332 |
tccccttcctccatattgctgaactctaagaaatgggttggcctatgat |
2850284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 796; E-Value: 0
Query Start/End: Original strand, 29 - 877
Target Start/End: Complemental strand, 2903164 - 2902316
Alignment:
| Q |
29 |
agaaactatgtataggttttaacaagaaaactggaaaaatagtaatttgcaaccccctatcaatttggtgtttggataagaaccgctagataaaccagat |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2903164 |
agaaactatgtataggttttaacaagaaaactggaaaaatagtaatttgcaaccccctatcaatttggtgtttggataagaaccgctagataaaccagat |
2903065 |
T |
|
| Q |
129 |
aaactttgatttacatatatgtgaataaaacttactaaaaaagagtctnnnnnnncatatagctagttaacatatatcaaggtattctattccagcaagc |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2903064 |
aaactttgatttacatatatgtgaataaaacttactaaaaaagagtctaaaaaaacatatagctagttaacatatatcaaggtattctattccagcaagc |
2902965 |
T |
|
| Q |
229 |
atacgaagactttgcaagcaagtttaacaggttttaaggctagaaatacaatgttttgattcaaaaagtactcctagtaagtgttttttctaacttgttc |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2902964 |
atacgaagactttgcaagcaagtttaacaggttttaaggctagaaatacaatgttttgattcaaaaagtactccttgtaagtgttttttctaacttgttc |
2902865 |
T |
|
| Q |
329 |
tacagctgaaacttcacacacaggcacttgaagagaaaatgaaaattataccttccattagatttcttatttacttagtagagctatgtttgactgagtt |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2902864 |
tacagctgaaacttcacacacaggcacttgaagagaaaatgaaaattataacttccattagatttcttatttacttagtagagctatgtttgactgagtt |
2902765 |
T |
|
| Q |
429 |
tatcaatcaatcttcgaaactgaatataagcagtggcaatttcacctactaaatatcagagcacaaaaccaatacacaaaaatacaagtaattgagaaat |
528 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2902764 |
tatcaatcaatcttcgaaactgaatataagcagtggcaatttcacctactaaatatcagagcacaaaaccaatacacaaaaataccagtaattgagaaat |
2902665 |
T |
|
| Q |
529 |
tagaggtaacctcatcaatgaccttcactaagtagttaataaagcttcaaggctttgatctctgcacaaacagaatcaaccaacaaaaattcaaaaagaa |
628 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2902664 |
tagaggtaacctcatcaatgactttcactaagtagttaataaagcttcaaggctttgatctcagcacaaacagaatcaaccaacaaaaattcaaaaagaa |
2902565 |
T |
|
| Q |
629 |
attatagaacatgttgaaatttccagaacagtgttcaatatagcaatgctgcaacatacaacttgatagtgtttgaagaaatagtgctacaactaagaca |
728 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2902564 |
attatagaacatgttgaaatttccagaacagtgttcaatatagcaatgctacaacataccacttgatagtgtttgaagaaatagtgctacaactaagaca |
2902465 |
T |
|
| Q |
729 |
aatcattttaaatccctcaaaagtattttacctttttacaatctccaactcaaacacactctaagagaatgtatcctctcgatctccctcggcgattgtc |
828 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2902464 |
aatcattttaaatccctcaaaagtattttacctttttacaatctccaactcaaacacactctaagagaatgtatcctctcgatctcccttggcgattgtc |
2902365 |
T |
|
| Q |
829 |
tccccttcctccatattgctgaactctaagaaatgggttggcctatgat |
877 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2902364 |
tccccttcctccatattgctgaactctaagaaatgggttggcctatgat |
2902316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 412 - 877
Target Start/End: Complemental strand, 42948888 - 42948435
Alignment:
| Q |
412 |
ctatgtttgactgagtttatcaatcaatcttcgaaactgaatataagcagtggcaatttcacctactaaatatcagagcacaaaaccaatacacaaaaat |
511 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||| | |||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
42948888 |
ctatgtttgactgagtttatgaatcaatctttgaaattcaatataagcagtggcaatttcacctactaaatttcagagcacaaaa-------------at |
42948802 |
T |
|
| Q |
512 |
acaagtaattgagaaattagaggtaacctcatcaatgaccttcactaagtagttaataaagcttcaaggctttgatctctgcacaaacagaatcaaccaa |
611 |
Q |
| |
|
|| || |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
42948801 |
accagcaattgagaaattagaggtgacctcatcaatgaccttctctaagtagttaataaagcttcaaggctttgatctctgcacagacacaatcaaccaa |
42948702 |
T |
|
| Q |
612 |
caaaaattcaaaaagaaattatagaaca-tgttgaaatttccagaacagtgttcaatatagcaatgctgcaacatacaacttgatagtgtttgaagaaat |
710 |
Q |
| |
|
|| ||||||||||||||||||||||||| ||| || ||| ||||||| ||||||| || |||||| | |||| ||||| ||||||||||||||||||| |
|
|
| T |
42948701 |
cacaaattcaaaaagaaattatagaacacagttaaagttttcagaacattgttcaacattgcaatgatacaacttacaatttgatagtgtttgaagaaac |
42948602 |
T |
|
| Q |
711 |
agtgctacaactaagacaaatcattttaaatccctc--aaaagtattttacctttttacaatctccaact-caaacacactctaagagaatgtatcctct |
807 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||| |||| ||||||||| | ||| |||| || | | ||||||||||||| |||||||||||||| |
|
|
| T |
42948601 |
agtgctacagctaagacaaatcattttaattccctcaaaaaattattttaccatgtta-aatcccctattccaaacacactcta--agaatgtatcctct |
42948505 |
T |
|
| Q |
808 |
cgatctccctcggcgattgtctccccttcctccatattgctgaactctaagaaatgggttggcctatgat |
877 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||| | |||||||||||||||||||| ||||||| |
|
|
| T |
42948504 |
cgatctccctcagaaattgtctccccttcctccatattggtaaactctaagaaatgggttggtctatgat |
42948435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 42949331 - 42949223
Alignment:
| Q |
29 |
agaaactatgtataggttttaacaagaaaactggaaaaatagtaatttgcaaccccctatcaatttggtgtttggataagaaccgctagataaaccagat |
128 |
Q |
| |
|
||||||| ||||||||||||| ||||||| ||||| |||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||| || |
|
|
| T |
42949331 |
agaaactccgtataggttttaaaaagaaaagtggaat--tagtaatttgcagccccctatcaatttagtgtttggataagaaccactagataaaccaaat |
42949234 |
T |
|
| Q |
129 |
aaactttgatt |
139 |
Q |
| |
|
||||||||||| |
|
|
| T |
42949233 |
aaactttgatt |
42949223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 316
Target Start/End: Complemental strand, 42949177 - 42949054
Alignment:
| Q |
184 |
catatagctagttaacatatatcaaggtattctattccagcaagcatacgaagactttgcaagcaagtttaacaggttttaaggctagaaatacaatgtt |
283 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||| | ||||| ||||| || ||||||||| |||||||||| ||| |||| | || |
|
|
| T |
42949177 |
catatagctagttatcatttatcaaggtattctattccaggatgcatatgaaga---------catgtttaacagattttaaggctggaagtacactatt |
42949087 |
T |
|
| Q |
284 |
ttgattcaaaaagtactcctagtaagtgttttt |
316 |
Q |
| |
|
||||||| ||| |||||| | || ||||||||| |
|
|
| T |
42949086 |
ttgattccaaatgtactcattgtcagtgttttt |
42949054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 3e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 790 - 877
Target Start/End: Original strand, 44774914 - 44775001
Alignment:
| Q |
790 |
taagagaatgtatcctctcgatctccctcggcgattgtctccccttcctccatattgctgaactctaagaaatgggttggcctatgat |
877 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
44774914 |
taagagaatgtatcctctcgatctccctcggtaattgtctccccttcctccatattgctgaactctaagaaatgagttggtctatgat |
44775001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 285 - 375
Target Start/End: Original strand, 44627825 - 44627915
Alignment:
| Q |
285 |
tgattcaaaaagtactcctagtaagtgttttttctaacttgttctacagctgaaacttcacacacaggcacttgaagagaaaatgaaaatt |
375 |
Q |
| |
|
||||||||||| ||||| | ||||||| |||| |||||||||||||| ||||||||||||| ||| | |||||||| ||||||||||| |
|
|
| T |
44627825 |
tgattcaaaaactactctttgtaagtgccttttttaacttgttctacacctgaaacttcacatacatgagtttgaagaggaaatgaaaatt |
44627915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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