View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1406_high_10 (Length: 421)
Name: NF1406_high_10
Description: NF1406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1406_high_10 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 13 - 421
Target Start/End: Original strand, 24914062 - 24914469
Alignment:
| Q |
13 |
aatatagatataagattgaaaaccagtaatagaacattgattatgacataacaaaggagattatttttatgtacaataggtttaacaaaatcagttcaga |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
24914062 |
aatatagatataagattgaaaaccagtaatagaacattgattatgacataacaaaggagattattttcatgtacaataggtttaactaaatcagttcaga |
24914161 |
T |
|
| Q |
113 |
tcaaaaacagcaagatttacctttgttgaattaaaagtctcaatagaagcaagatttccatcgatgaaactcaagagatgtttgttatgctccaataggg |
212 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| | |
|
|
| T |
24914162 |
tcaaaa-cagcaagatttaccttcgttgaattaaaagtctcaatagaagcaagatttccatcgattaaacttaagagctgtttgttgtgctccaatagtg |
24914260 |
T |
|
| Q |
213 |
cctttgcggcctctaaaattgctgccaaaagcaaaatgcaaagttcaaaggagatgctttaaaaattaaaatggacatgcaaatagataagatgccaaac |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
24914261 |
cctttgcggcctctaaaattgctgccaaaagcaaaatgcaaagttcaaaggagatgctttaaaaattaaactggacatgcaaatagataagatgccaagc |
24914360 |
T |
|
| Q |
313 |
ttaacattccaaaagataaattatgtattcaaatatcaaatgattttaaagctattaaggaaccaaccttccaaagagatgccaccatcattgtccatcc |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24914361 |
ttaacattccaaaagataaattatgtattcaaatatcaaatgattttaaagctactaaggaaccaaccttccaaagagatgccaccatcattgtccatcc |
24914460 |
T |
|
| Q |
413 |
ttaactctt |
421 |
Q |
| |
|
||||||||| |
|
|
| T |
24914461 |
ttaactctt |
24914469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University