View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1406_high_15 (Length: 357)
Name: NF1406_high_15
Description: NF1406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1406_high_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 29 - 349
Target Start/End: Complemental strand, 43360555 - 43360256
Alignment:
| Q |
29 |
actttgtgatactagtatattagcttttaaattgagttcattcttataaaattttgcttatnnnnnnnntctattcatcttataaaatcagttaataaaa |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43360555 |
actttgtgatactagtatattagcttttaaattgagttcattcttataaaattttgcttataaaaaaa-tctattcatcttataaaatcagttaataaaa |
43360457 |
T |
|
| Q |
129 |
tgacaaagaaccttttcataaattattatattttagtaattttttaaaaatttgtgagttgtgtttttctcaatctaggcaacaaatacaatactataca |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
43360456 |
tgacaaagaaccttttcataaattattatattttagtaattttttaaaaatttgtgagttgtgtttttctcaatctagg--------------------a |
43360377 |
T |
|
| Q |
229 |
actagtcattaatttggaaggaactttaacctggctcacgcaacatgttcacaaattaattacactgtctacaaatattcttgcactccatcatactgta |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43360376 |
actagtcattaatttggaaggaactttaacctggctcacgcaacatgttcacaaattaattacactgtctacaaatattcttgcactccatcataatgta |
43360277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University