View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1406_high_17 (Length: 351)
Name: NF1406_high_17
Description: NF1406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1406_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 16 - 338
Target Start/End: Complemental strand, 8636964 - 8636647
Alignment:
| Q |
16 |
cagacattattcacttattttcacttgcatctccgacattaccaacttaatgtcactttagtccatatcactaccaacaaaggaacggatttgattaaca |
115 |
Q |
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| T |
8636964 |
cagacattattcacttattttcacttgcatctccgacattaccaacttaatgtcactttagtccatatcactaccaacaaaggaacggatttgattagca |
8636865 |
T |
|
| Q |
116 |
ttttgcaatttcaaggatcactttggaatattattaatgtatgagattatgttgatacatacagttctacaatttcagggaccaaattgattatttaccc |
215 |
Q |
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||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
8636864 |
ttttgcaatttcaaggatcactttggattactattaatgtatgagattatgttga----tacagttctacaatttcagggaccaaattgattattta-tc |
8636770 |
T |
|
| Q |
216 |
caaaaattaaaccaaacagacaattcatcaaacatgttcaaggtgcaaaagtaaaccaaaaaccaacctgctgagagacgtaaacagcaaaaaatgaaac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8636769 |
caaaaattaaaccaaacagacaattcatcaaacatgttcaagttgctaaagtaaaccaaaaaccaacctgctgagagacgtaaacagcaaaaaatgaaac |
8636670 |
T |
|
| Q |
316 |
ccaccaccaatgttttccatatt |
338 |
Q |
| |
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|||||||||| |||||||||||| |
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| T |
8636669 |
ccaccaccaaagttttccatatt |
8636647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 3115005 - 3114967
Alignment:
| Q |
182 |
ctacaatttcagggaccaaattgattatttaccccaaaa |
220 |
Q |
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| T |
3115005 |
ctacaatttcagggaccaaattgagtatttaccccaaaa |
3114967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 213
Target Start/End: Original strand, 7145580 - 7145682
Alignment:
| Q |
107 |
tgattaacattttgcaatttcaaggatcactttggaatattattaatgtatgagattatgttgatacatacagttctacaatttcagggaccaaattgat |
206 |
Q |
| |
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||||||| ||||| ||||| | |||||| ||||||||||| |||| || ||||||| ||||| ||| || ||||||||| |||||||||||||| |
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| T |
7145580 |
tgattaatattttacaattatagggatcattttggaatattgataatctaagagattaagttgacaca----gtcctacaattttagggaccaaattgag |
7145675 |
T |
|
| Q |
207 |
tatttac |
213 |
Q |
| |
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||||||| |
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| T |
7145676 |
tatttac |
7145682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 204
Target Start/End: Complemental strand, 7424293 - 7424202
Alignment:
| Q |
109 |
attaacattttgcaatttcaaggatcactttggaatattattaatgtatgagattatgttgatacatacagttctacaatttcagggaccaaattg |
204 |
Q |
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|||||||||||||||||||| |||||| |||| |||||| ||||||| |||| || |||| ||||||| ||||||||| ||||| ||||||| |
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| T |
7424293 |
attaacattttgcaatttcagggatcattttgaaatattgttaatgtcagagactaggttg----atacagtcctacaattttagggatcaaattg |
7424202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 146
Target Start/End: Complemental strand, 9078337 - 9078278
Alignment:
| Q |
87 |
taccaacaaaggaacggatttgattaacattttgcaatttcaaggatcactttggaatat |
146 |
Q |
| |
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|||||| | ||| ||| |||||||||| ||||||||||||| ||||||| |||||||||| |
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| T |
9078337 |
taccaatagagggacgaatttgattaaaattttgcaatttcgaggatcattttggaatat |
9078278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 21496460 - 21496420
Alignment:
| Q |
107 |
tgattaacattttgcaatttcaaggatcactttggaatatt |
147 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||| |||||| |
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| T |
21496460 |
tgattaacattttgcaatttcagggatcattttgaaatatt |
21496420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 44139328 - 44139288
Alignment:
| Q |
104 |
atttgattaacattttgcaatttcaaggatcactttggaat |
144 |
Q |
| |
|
||||||||||||||||||||||||||| |||| | |||||| |
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| T |
44139328 |
atttgattaacattttgcaatttcaagtatcattgtggaat |
44139288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 54069319 - 54069267
Alignment:
| Q |
104 |
atttgattaacattttgcaatttcaaggatcactttggaatattattaatgta |
156 |
Q |
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|
|||||||||| |||||||||||||||||| | ||||||||||| ||||||| |
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| T |
54069319 |
atttgattaatattttgcaatttcaaggaaaattttggaatattcataatgta |
54069267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 21873581 - 21873693
Alignment:
| Q |
18 |
gacattattcacttattttcacttgcatctccgacattaccaacttaatgtcactttagtccatatcactaccaacaaaggaacggatttgattaacatt |
117 |
Q |
| |
|
||||||||||||||| |||| | |||| | || |||||||| ||||||||| | |||||| || | |||||| | ||||||| ||||||||| ||| |
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| T |
21873581 |
gacattattcacttagtttccaattcatccctgatattaccaatttaatgtcattctagtccctacaaataccaatagaggaacgagtttgattaaaatt |
21873680 |
T |
|
| Q |
118 |
ttgcaatttcaag |
130 |
Q |
| |
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||||||||||||| |
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| T |
21873681 |
ttgcaatttcaag |
21873693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 32702746 - 32702696
Alignment:
| Q |
20 |
cattattcacttattttcacttgcatctccgacattaccaacttaatgtca |
70 |
Q |
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|||||||| |||| ||||| |||||||||||||||||||||||| ||||| |
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| T |
32702746 |
cattattctcttagtttcaaatgcatctccgacattaccaacttattgtca |
32702696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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