View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1406_high_2 (Length: 751)
Name: NF1406_high_2
Description: NF1406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1406_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 626; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 1 - 669
Target Start/End: Original strand, 31612049 - 31612718
Alignment:
| Q |
1 |
ttacaaattagaatctaaaacactgaaatctagatatatgtggttcaaatgtgtgtaaataaaatttagttactgataaggcc-taaatatattgttcaa |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||| |
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| T |
31612049 |
ttacaaattagaatctaaaacactgaaatctagatatatgtagttcaaatgtgtgtaaataaaatttagttactgataaagccctaaatataatgttcaa |
31612148 |
T |
|
| Q |
100 |
aatcttaaattggcacaaatacaatttcgatccctatactttatctcatttacgagtttggttcttcatttttaaattcatgatttaggtcaataacttc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31612149 |
aatcttaaattggcacaaatacaatttcgatccctatactttatctcatttatgagtttggttcttcatttttaaattcatgatttaggtcaataacttc |
31612248 |
T |
|
| Q |
200 |
aaaatgcatgaacttttttctacctatacaatttgatgctgaattttaatatcatccatgttttttatatgtagttatcttatctattaaccttgtgtag |
299 |
Q |
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||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31612249 |
aaaatgcatgaacttttttctgcctatacaatttgatgttgaattttaatatcatccatgttttttatatgtagttatcttatctattaaccttgtgtag |
31612348 |
T |
|
| Q |
300 |
gggctggaatccttggtcatctctctgattcgtttcttggacgaaaaggatctctcacgatagtttgcatactaaacagcatcttcggcatcctaacagc |
399 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
31612349 |
gggctggaatctttggtcatctctctgattcgtttcttggacgaaaaggatctctcacgatagtttgcatcctaaacagcatcttcagcatcctaacagc |
31612448 |
T |
|
| Q |
400 |
cttctcccccaattacatctcctacttcttcctccgcttcctcactggtttcagcacaggtggcgtcggcctctgcgccttcgtacttgccacagagccc |
499 |
Q |
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| T |
31612449 |
cttctcccccaattacatctcctacttcttcctccgcttcctcactggtttcagcacaggtggcgtcggcctctgcgccttcgtacttgccacagagccc |
31612548 |
T |
|
| Q |
500 |
gtaggccccacaatgcgtggtgccgcaggcatgtctaccttctacttcttctcaacaggcatcgcagtcctctcaggcatagcaaacatcttcccaagat |
599 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31612549 |
gtaggccccacaatgcgtggtgccgcaggcatgtctaccttctacttcttctcaacaggcatcgcagtcctctcaggcatagcaaacatcttcccaagat |
31612648 |
T |
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| Q |
600 |
ggcgcgaactatacatagcctcctcaattccctcccttgtattcctcctctttgtcctccccttcatctc |
669 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31612649 |
ggcgcgaactatacatagcctcctcaattccctcccttgtattcctcctctttgtcctccccttcatctc |
31612718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 429 - 552
Target Start/End: Complemental strand, 34419175 - 34419052
Alignment:
| Q |
429 |
tcctccgcttcctcactggtttcagcacaggtggcgtcggcctctgcgccttcgtacttgccacagagcccgtaggccccacaatgcgtggtgccgcagg |
528 |
Q |
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|||||||| ||||||| ||||||||||| || || || ||||| ||||||||||| |||||||| |||||| | ||||| ||| ||||| ||||| |
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| T |
34419175 |
tcctccgcctcctcaccggtttcagcactggcggtgttggcctttgcgccttcgtccttgccaccgagcccattggcccatcaaaacgtggcatggcagg |
34419076 |
T |
|
| Q |
529 |
catgtctaccttctacttcttctc |
552 |
Q |
| |
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||||| ||||||||||||||||| |
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| T |
34419075 |
aatgtccaccttctacttcttctc |
34419052 |
T |
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