View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1406_high_20 (Length: 327)
Name: NF1406_high_20
Description: NF1406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1406_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 9e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 38 - 244
Target Start/End: Original strand, 45668955 - 45669160
Alignment:
| Q |
38 |
cttatattgttgaaatatccattcatttatatgattctttgtctaaagtctaaggttttaaaaatatattttaccaaataactttggagctnnnnnnnnn |
137 |
Q |
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| T |
45668955 |
cttatattgttgaaatatccattcatttatatgattctttgtctaaagtctaaggttttaaaa-tatattttaccaaataactttggagctaaaaaaacc |
45669053 |
T |
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| Q |
138 |
nnnnnnnnnnnnncttcaacattttatccaaagctcttattcttacttttaactttcaaataacctttaagacctgaaaaaggtttaacatgatataacc |
237 |
Q |
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| T |
45669054 |
aattgtcaaaaaacttcaacattttatccaaagctcttattcttacttttaactttcaaataacctttaagacctgaaaaaagtttaacatgatataacc |
45669153 |
T |
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| Q |
238 |
ttagttt |
244 |
Q |
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||||||| |
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| T |
45669154 |
ttagttt |
45669160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 302
Target Start/End: Original strand, 45669182 - 45669212
Alignment:
| Q |
272 |
cactatactcctgttattttaaatttcttca |
302 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
45669182 |
cactatactcctgttattttaaatttcttca |
45669212 |
T |
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