View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1406_low_11 (Length: 422)
Name: NF1406_low_11
Description: NF1406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1406_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 31455415 - 31455031
Alignment:
| Q |
1 |
gtggtagcttctcttaaaaccttagccaaaaatattaaattttgatcttgtcccataatagaaaaaagctttactttgttttccattttcttcatttcac |
100 |
Q |
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| T |
31455415 |
gtggtagcttctcttaaaaccttagccaaaaatattaaattttgatcttggcccataatagaaaaaagctttactttgttttccattttcttcatttcac |
31455316 |
T |
|
| Q |
101 |
taagttgcttagaaatttccttctttgccttctttctaaagcaatcatactcatatatgctgctttcaatgcttgaagttgaatttcctcgtcttctacg |
200 |
Q |
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| T |
31455315 |
caagttgctttgaaatttccttctttgccttctttctaaagcaatcatactcatatatgctgctttcaatgcttgaagttgaatttcctcgtcttctacg |
31455216 |
T |
|
| Q |
201 |
tatagcggattgaagtgtttccacatgttccttgagattcaagagtaattcccttgatgaactacatgcatctaaaagtgtaactgaaccacttaatgaa |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31455215 |
tatagccgattgaagtgtttccacatgttccttgagattcaagagtaattcccttgatgaaccacatgcatctaaaagtgtaactgaaccacttaatgaa |
31455116 |
T |
|
| Q |
301 |
tcttccactagcttcccattttgatagtgtaaaagtgcttgttgtgtttgttgagattggaagagttcttccatgcaattgtata |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31455115 |
tcttccactagcttcccattttgatagtgtaaaagtgcttgttgtgtttgttgagattggaagagttcttccatgcaattgtata |
31455031 |
T |
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