View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1406_low_13 (Length: 413)

Name: NF1406_low_13
Description: NF1406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1406_low_13
NF1406_low_13
[»] chr5 (7 HSPs)
chr5 (153-295)||(29572683-29572825)
chr5 (153-295)||(29574060-29574202)
chr5 (153-295)||(29575437-29575579)
chr5 (153-295)||(29576814-29576956)
chr5 (153-295)||(29578191-29578333)
chr5 (153-295)||(29579568-29579710)
chr5 (153-260)||(23923048-23923155)
[»] chr7 (4 HSPs)
chr7 (157-262)||(23054802-23054907)
chr7 (157-244)||(47923910-47923997)
chr7 (153-254)||(5865312-5865413)
chr7 (154-215)||(22819552-22819613)
[»] chr1 (2 HSPs)
chr1 (157-225)||(4422889-4422957)
chr1 (187-215)||(48265586-48265614)
[»] chr3 (3 HSPs)
chr3 (167-264)||(9509949-9510046)
chr3 (167-264)||(9517924-9518021)
chr3 (154-215)||(25132349-25132410)
[»] chr6 (1 HSPs)
chr6 (153-254)||(900688-900789)


Alignment Details
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 153 - 295
Target Start/End: Original strand, 29572683 - 29572825
Alignment:
Q  153 tgaggcttggcaatggaggaggaggttatggttatgggaggaggagttgttagcggagtgtagaatgtcactttctaacattattttgcagggtaatgtt 252  Q
    |||||||||||||||||| |||| ||| ||| ||||||||||||||||||||||||||||||| || | |||||||||| ||||||||||||||||||||    
T  29572683 tgaggcttggcaatggagaaggatgttgtggatatgggaggaggagttgttagcggagtgtaggatattactttctaacgttattttgcagggtaatgtt 29572782  T
Q  253 tccgatcacttgtttcggtatcggccgactgcttggtttgtaa 295  Q
    |||||||| |||||| ||||||||  |||||||||||||||||    
T  29572783 tccgatcatttgtttgggtatcggttgactgcttggtttgtaa 29572825  T

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Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 153 - 295
Target Start/End: Original strand, 29574060 - 29574202
Alignment:
Q  153 tgaggcttggcaatggaggaggaggttatggttatgggaggaggagttgttagcggagtgtagaatgtcactttctaacattattttgcagggtaatgtt 252  Q
    |||||||||||||||||| |||| ||| ||| ||||||||||||||||||||||||||||||| || | |||||||||| ||||||||||||||||||||    
T  29574060 tgaggcttggcaatggagaaggatgttgtggatatgggaggaggagttgttagcggagtgtaggatattactttctaacgttattttgcagggtaatgtt 29574159  T
Q  253 tccgatcacttgtttcggtatcggccgactgcttggtttgtaa 295  Q
    |||||||| |||||| ||||||||  |||||||||||||||||    
T  29574160 tccgatcatttgtttgggtatcggttgactgcttggtttgtaa 29574202  T

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Target: chr5; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 153 - 295
Target Start/End: Original strand, 29575437 - 29575579
Alignment:
Q  153 tgaggcttggcaatggaggaggaggttatggttatgggaggaggagttgttagcggagtgtagaatgtcactttctaacattattttgcagggtaatgtt 252  Q
    |||||||||||||||||| |||| ||| ||| ||||||||||||||||||||||||||||||| || | |||||||||| ||||||||||||||||||||    
T  29575437 tgaggcttggcaatggagaaggatgttgtggatatgggaggaggagttgttagcggagtgtaggatattactttctaacgttattttgcagggtaatgtt 29575536  T
Q  253 tccgatcacttgtttcggtatcggccgactgcttggtttgtaa 295  Q
    |||||||| |||||| ||||||||  |||||||||||||||||    
T  29575537 tccgatcatttgtttgggtatcggttgactgcttggtttgtaa 29575579  T

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Target: chr5; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 153 - 295
Target Start/End: Original strand, 29576814 - 29576956
Alignment:
Q  153 tgaggcttggcaatggaggaggaggttatggttatgggaggaggagttgttagcggagtgtagaatgtcactttctaacattattttgcagggtaatgtt 252  Q
    |||||||||||||||||| |||| ||| ||| ||||||||||||||||||||||||||||||| || | |||||||||| ||||||||||||||||||||    
T  29576814 tgaggcttggcaatggagaaggatgttgtggatatgggaggaggagttgttagcggagtgtaggatattactttctaacgttattttgcagggtaatgtt 29576913  T
Q  253 tccgatcacttgtttcggtatcggccgactgcttggtttgtaa 295  Q
    |||||||| |||||| ||||||||  |||||||||||||||||    
T  29576914 tccgatcatttgtttgggtatcggttgactgcttggtttgtaa 29576956  T

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Target: chr5; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 153 - 295
Target Start/End: Original strand, 29578191 - 29578333
Alignment:
Q  153 tgaggcttggcaatggaggaggaggttatggttatgggaggaggagttgttagcggagtgtagaatgtcactttctaacattattttgcagggtaatgtt 252  Q
    |||||||||||||||||| |||| ||| ||| ||||||||||||||||||||||||||||||| || | |||||||||| ||||||||||||||||||||    
T  29578191 tgaggcttggcaatggagaaggatgttgtggatatgggaggaggagttgttagcggagtgtaggatattactttctaacgttattttgcagggtaatgtt 29578290  T
Q  253 tccgatcacttgtttcggtatcggccgactgcttggtttgtaa 295  Q
    |||||||| |||||| ||||||||  |||||||||||||||||    
T  29578291 tccgatcatttgtttgggtatcggttgactgcttggtttgtaa 29578333  T

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Target: chr5; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 153 - 295
Target Start/End: Original strand, 29579568 - 29579710
Alignment:
Q  153 tgaggcttggcaatggaggaggaggttatggttatgggaggaggagttgttagcggagtgtagaatgtcactttctaacattattttgcagggtaatgtt 252  Q
    |||||||||||||||||| |||| ||| ||| ||||||||||||||||||||||||||||||| || | |||||||||| ||||||||||||||||||||    
T  29579568 tgaggcttggcaatggagaaggatgttgtggatatgggaggaggagttgttagcggagtgtaggatattactttctaacgttattttgcagggtaatgtt 29579667  T
Q  253 tccgatcacttgtttcggtatcggccgactgcttggtttgtaa 295  Q
    |||||||| |||||| ||||||||  |||||||||||||||||    
T  29579668 tccgatcatttgtttgggtatcggttgactgcttggtttgtaa 29579710  T

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Target: chr5; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 153 - 260
Target Start/End: Complemental strand, 23923155 - 23923048
Alignment:
Q  153 tgaggcttggcaatggaggaggaggttatggttatgggaggaggagttgttagcggagtgtagaatgtcactttctaacattattttgcagggtaatgtt 252  Q
    |||||||||||| |||||||||||||| ||| | |||||||||||| ||||||||||||||||  ||| |||||||||| |||||||||||| |||||||    
T  23923155 tgaggcttggcagtggaggaggaggttgtgggtgtgggaggaggagatgttagcggagtgtaggttgttactttctaacgttattttgcaggttaatgtt 23923056  T
Q  253 tccgatca 260  Q
    || |||||    
T  23923055 tctgatca 23923048  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 157 - 262
Target Start/End: Original strand, 23054802 - 23054907
Alignment:
Q  157 gcttggcaatggaggaggaggttatggttatgggaggaggagttgttagcggagtgtagaatgtcactttctaacattattttgcagggtaatgtttccg 256  Q
    |||||||| |||||||||||||| ||| | ||||||||  || |||||||||||||||| || | |||||||||| ||||| |||||| | || |||| |    
T  23054802 gcttggcagtggaggaggaggttgtgggtgtgggaggaaaagatgttagcggagtgtaggatattactttctaactttattatgcaggttgatatttcgg 23054901  T
Q  257 atcact 262  Q
    ||||||    
T  23054902 atcact 23054907  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 157 - 244
Target Start/End: Complemental strand, 47923997 - 47923910
Alignment:
Q  157 gcttggcaatggaggaggaggttatggttatgggaggaggagttgttagcggagtgtagaatgtcactttctaacattattttgcagg 244  Q
    |||||||| |||||||||||||| ||| | |||||||| ||| |||||| ||||||||  | || |||||||||| || |||||||||    
T  47923997 gcttggcagtggaggaggaggttgtgggtgtgggaggaagagatgttagaggagtgtatgacgttactttctaacgttgttttgcagg 47923910  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 254
Target Start/End: Complemental strand, 5865413 - 5865312
Alignment:
Q  153 tgaggcttggcaatggaggaggaggttatggttatgggaggaggagttgttagcggagtgtagaatgtcactttctaacattattttgcagggtaatgtt 252  Q
    |||||| ||||| |||||| ||| ||| |||   || ||||||||||||||||||||||||||  ||| |||| ||||  ||| |||||||  |||||||    
T  5865413 tgaggcgtggcagtggaggcggatgttgtgggcgtgagaggaggagttgttagcggagtgtaggttgttacttgctaatgttactttgcagattaatgtt 5865314  T
Q  253 tc 254  Q
    ||    
T  5865313 tc 5865312  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 22819552 - 22819613
Alignment:
Q  154 gaggcttggcaatggaggaggaggttatggttatgggaggaggagttgttagcggagtgtag 215  Q
    ||||| ||||||||| | |||||||| |||   ||||||||||||||||||| |||||||||    
T  22819552 gaggcgtggcaatggcgtaggaggttgtgggcctgggaggaggagttgttaggggagtgtag 22819613  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 4422957 - 4422889
Alignment:
Q  157 gcttggcaatggaggaggaggttatggttatgggaggaggagttgttagcggagtgtagaatgtcactt 225  Q
    |||||||| |||||||||||||| ||| |||| ||||| |||||||||||||||||||| |||| ||||    
T  4422957 gcttggcagtggaggaggaggttgtgggtatgagaggaagagttgttagcggagtgtaggatgttactt 4422889  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 215
Target Start/End: Original strand, 48265586 - 48265614
Alignment:
Q  187 tgggaggaggagttgttagcggagtgtag 215  Q
    |||||||||||||||||||||||||||||    
T  48265586 tgggaggaggagttgttagcggagtgtag 48265614  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 264
Target Start/End: Complemental strand, 9510046 - 9509949
Alignment:
Q  167 ggaggaggaggttatggttatgggaggaggagttgttagcggagtgtagaatgtcactttctaacattattttgcagggtaatgtttccgatcacttg 264  Q
    ||||||||||||| |||  |||||||||||||||| ||||||||||||| || | |||| ||||  ||| ||||| |  || |||||| |||||||||    
T  9510046 ggaggaggaggttgtgggcatgggaggaggagttggtagcggagtgtaggatcttacttgctaatgttactttgctgtctagtgtttcagatcacttg 9509949  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 264
Target Start/End: Complemental strand, 9518021 - 9517924
Alignment:
Q  167 ggaggaggaggttatggttatgggaggaggagttgttagcggagtgtagaatgtcactttctaacattattttgcagggtaatgtttccgatcacttg 264  Q
    ||||||||||||| |||  |||||||||||||||| ||||||||||||| || | |||| ||||  ||| ||||| |  || |||||| |||||||||    
T  9518021 ggaggaggaggttgtgggcatgggaggaggagttggtagcggagtgtaggatcttacttgctaatgttactttgctgtctagtgtttcagatcacttg 9517924  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 25132410 - 25132349
Alignment:
Q  154 gaggcttggcaatggaggaggaggttatggttatgggaggaggagttgttagcggagtgtag 215  Q
    ||||||||| ||||||| |||||||| ||| | ||||||||||||||  ||| |||||||||    
T  25132410 gaggcttggaaatggagaaggaggttgtgggtgtgggaggaggagttactaggggagtgtag 25132349  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 254
Target Start/End: Original strand, 900688 - 900789
Alignment:
Q  153 tgaggcttggcaatggaggaggaggttatggttatgggaggaggagttgttagcggagtgtagaatgtcactttctaacattattttgcagggtaatgtt 252  Q
    |||||| ||||| || | ||||||||| |||   |||||||| ||||||||||||||||||||  ||| |||| ||||  ||| ||||||||  ||||||    
T  900688 tgaggcgtggcagtgaaagaggaggttgtgggcgtgggaggatgagttgttagcggagtgtaggttgttacttgctaatgttactttgcaggtcaatgtt 900787  T
Q  253 tc 254  Q
    ||    
T  900788 tc 900789  T

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