View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1406_low_14 (Length: 408)
Name: NF1406_low_14
Description: NF1406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1406_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 29 - 402
Target Start/End: Complemental strand, 43360555 - 43360204
Alignment:
| Q |
29 |
actttgtgatactagtatattagcttttaaattgagttcattcttataaaattttgcttatnnnnnnnntctattcatcttataaaatcagttaataaaa |
128 |
Q |
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| T |
43360555 |
actttgtgatactagtatattagcttttaaattgagttcattcttataaaattttgcttataaaaaaa-tctattcatcttataaaatcagttaataaaa |
43360457 |
T |
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| Q |
129 |
tgacaaagaaccttttcataaattattatattttagtaattttttaaaaatttgtgagttgtgtttttctcaatctaggcaacaaatacaatactataca |
228 |
Q |
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| T |
43360456 |
tgacaaagaaccttttcataaattattatattttagtaattttttaaaaatttgtgagttgtgtttttctcaatctagg--------------------a |
43360377 |
T |
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| Q |
229 |
actagtcattaatttggaaggaactttaacctggctcacgcaacatgttcacaaattaattacactgtctacaaatattcttgcactccatcatactgta |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43360376 |
actagtcattaatttggaaggaactttaacctggctcacgcaacatgttcacaaattaattacactgtctacaaatattcttgcactccatcataatgta |
43360277 |
T |
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| Q |
329 |
ttggactaattcattcatctcctctcccccaaagcatgaactcagtgcattgctttcttaggcctctctgctcc |
402 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43360276 |
ttggactaattcattcatctcctct-acccaaagcatgaactcagtgcattgctttcttaggcctctcagctcc |
43360204 |
T |
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