View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1406_low_15 (Length: 391)

Name: NF1406_low_15
Description: NF1406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1406_low_15
NF1406_low_15
[»] chr8 (6 HSPs)
chr8 (253-391)||(9936426-9936563)
chr8 (93-247)||(9937379-9937529)
chr8 (175-247)||(9939751-9939823)
chr8 (310-390)||(37269817-37269897)
chr8 (202-244)||(9945805-9945847)
chr8 (310-390)||(42941271-42941351)
[»] chr7 (4 HSPs)
chr7 (293-391)||(42460057-42460156)
chr7 (191-243)||(19538751-19538803)
chr7 (193-243)||(19545404-19545454)
chr7 (180-243)||(47228630-47228693)
[»] chr5 (6 HSPs)
chr5 (175-247)||(35182096-35182168)
chr5 (191-247)||(38783919-38783975)
chr5 (195-243)||(9211371-9211419)
chr5 (175-243)||(19242357-19242424)
chr5 (195-243)||(12560239-12560287)
chr5 (336-382)||(40296118-40296164)
[»] chr1 (4 HSPs)
chr1 (180-247)||(5050486-5050553)
chr1 (191-243)||(1466874-1466926)
chr1 (336-390)||(32774127-32774181)
chr1 (195-243)||(35923337-35923385)
[»] chr3 (7 HSPs)
chr3 (310-390)||(53553626-53553704)
chr3 (193-243)||(9450801-9450851)
chr3 (193-243)||(17724650-17724700)
chr3 (193-243)||(19025879-19025929)
chr3 (193-243)||(28838381-28838431)
chr3 (177-243)||(28830401-28830466)
chr3 (195-241)||(26640819-26640865)
[»] chr4 (3 HSPs)
chr4 (254-361)||(50436713-50436817)
chr4 (310-391)||(2282273-2282354)
chr4 (195-247)||(44089780-44089832)
[»] chr6 (2 HSPs)
chr6 (321-391)||(1034329-1034400)
chr6 (310-387)||(32548944-32549020)
[»] chr2 (5 HSPs)
chr2 (310-391)||(1479422-1479500)
chr2 (177-243)||(7959598-7959663)
chr2 (311-387)||(13016028-13016101)
chr2 (336-390)||(11272561-11272615)
chr2 (336-390)||(33858654-33858708)
[»] scaffold0760 (1 HSPs)
scaffold0760 (310-390)||(1696-1776)


Alignment Details
Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 253 - 391
Target Start/End: Complemental strand, 9936563 - 9936426
Alignment:
Q  253 aacaataaaaaccaccggcactagaaaacagataaaatcgagccactcaagcctctctagcagatccaaaaaagccagcacctttcatcttctatttagg 352  Q
    |||||||||||||||| |||| | | ||  ||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  9936563 aacaataaaaaccacctgcac-atagaatggataaaaccgagccactcaagcctctgcagcagatccaaaaaagccagcacctttcatcttctatttagg 9936465  T
Q  353 cactctctacggttccaagtccactcataaaagaggaac 391  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  9936464 cactgtctagggttccaagtccactcataaaagaggaac 9936426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 93 - 247
Target Start/End: Complemental strand, 9937529 - 9937379
Alignment:
Q  93 cattttattgatattgtcggattcagctgaaacaattggaaaatatttttgcaaaatcatgattaatgtttcttnnnnnnntaattaaactattattgga 192  Q
    ||||||||||||  |||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||       |||||||||||||||||||    
T  9937529 cattttattgat--tgtcggat-cagctgaagcaattggaaaatatttttgcaaaaccatgattaatgtttcttaaaaaaataattaaactattattgga 9937433  T
Q  193 agggggctgcgcgaacgcaggcccccacagcaacaaattatgatgtaggctgttc 247  Q
    ||||| | ||||||||||||||||||||||||||||| |||||||||||||||||    
T  9937432 aggggcc-gcgcgaacgcaggcccccacagcaacaaactatgatgtaggctgttc 9937379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 9939823 - 9939751
Alignment:
Q  175 aattaaactattattggaagggggctgcgcgaacgcaggcccccacagcaacaaattatgatgtaggctgttc 247  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  9939823 aattaaactattattggaagagggccgcgcgaacgcaggcccccacagcaacaaattatgatgtaggttgttc 9939751  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 390
Target Start/End: Original strand, 37269817 - 37269897
Alignment:
Q  310 tagcagatccaaaaaagccagcacctttcatcttctatttaggcactctctacggttccaagtccactcataaaagaggaa 390  Q
    ||||||||||||||||| ||||    ||||||||||||| || || |||||| | ||||||||||||||||||||||||||    
T  37269817 tagcagatccaaaaaagacagccggcttcatcttctattaagacattctctaggattccaagtccactcataaaagaggaa 37269897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 202 - 244
Target Start/End: Complemental strand, 9945847 - 9945805
Alignment:
Q  202 cgcgaacgcaggcccccacagcaacaaattatgatgtaggctg 244  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  9945847 cgcgaacgcaggcccccacagcaacaaattataatgtaggctg 9945805  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 310 - 390
Target Start/End: Complemental strand, 42941351 - 42941271
Alignment:
Q  310 tagcagatccaaaaaagccagcacctttcatcttctatttaggcactctctacggttccaagtccactcataaaagaggaa 390  Q
    ||||||||||||||||| ||||    |||||||||||||  | || |||||| | ||||||||||||||||||||||||||    
T  42941351 tagcagatccaaaaaagacagccggcttcatcttctattacgacattctctaggattccaagtccactcataaaagaggaa 42941271  T

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Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 293 - 391
Target Start/End: Original strand, 42460057 - 42460156
Alignment:
Q  293 agccactcaagcctctctagcagatccaaaaaa-gccagcacctttcatcttctatttaggcactctctacggttccaagtccactcataaaagaggaac 391  Q
    |||||||||||||||| |||||||| ||||||| | |||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||    
T  42460057 agccactcaagcctctgtagcagattcaaaaaaaggcagcacctttcatcttctatttaggcactctctaggattccaagtctactcataaaagaggaac 42460156  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 191 - 243
Target Start/End: Original strand, 19538751 - 19538803
Alignment:
Q  191 gaagggggctgcgcgaacgcaggcccccacagcaacaaattatgatgtaggct 243  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  19538751 gaagggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtaggct 19538803  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 19545404 - 19545454
Alignment:
Q  193 agggggctgcgcgaacgcaggcccccacagcaacaaattatgatgtaggct 243  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  19545404 agggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtaggct 19545454  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 47228693 - 47228630
Alignment:
Q  180 aactattattggaagggggctgcgcgaacgcaggcccccacagcaacaaattatgatgtaggct 243  Q
    |||||| |||||| ||  || |||||||||||| ||||| |||||||||||||| |||||||||    
T  47228693 aactatgattggatggaagccgcgcgaacgcagaccccctcagcaacaaattataatgtaggct 47228630  T

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Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 35182168 - 35182096
Alignment:
Q  175 aattaaactattattggaagggggctgcgcgaacgcaggcccccacagcaacaaattatgatgtaggctgttc 247  Q
    |||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35182168 aattgaactataattggaagggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtaggctgttc 35182096  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 38783975 - 38783919
Alignment:
Q  191 gaagggggctgcgcgaacgcaggcccccacagcaacaaattatgatgtaggctgttc 247  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  38783975 gaagggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtaggctgttc 38783919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 9211371 - 9211419
Alignment:
Q  195 ggggctgcgcgaacgcaggcccccacagcaacaaattatgatgtaggct 243  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9211371 ggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtaggct 9211419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 19242357 - 19242424
Alignment:
Q  175 aattaaactattattggaagggggctgcgcgaacgcaggcccccacagcaacaaattatgatgtaggct 243  Q
    ||||| |||| |||||||||||| | |||||||||||||||||| | ||||||||||||||||||||||    
T  19242357 aattatactactattggaaggggcc-gcgcgaacgcaggcccccgctgcaacaaattatgatgtaggct 19242424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 12560287 - 12560239
Alignment:
Q  195 ggggctgcgcgaacgcaggcccccacagcaacaaattatgatgtaggct 243  Q
    |||||||||||||||||  ||||||| ||||||||||||||||||||||    
T  12560287 ggggctgcgcgaacgcaaacccccacggcaacaaattatgatgtaggct 12560239  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 40296118 - 40296164
Alignment:
Q  336 ttcatcttctatttaggcactctctacggttccaagtccactcataa 382  Q
    |||||||||||||||| |||||| || | ||||||||||||||||||    
T  40296118 ttcatcttctatttagacactctttaggattccaagtccactcataa 40296164  T

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Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 5050486 - 5050553
Alignment:
Q  180 aactattattggaagggggctgcgcgaacgcaggcccccacagcaacaaattatgatgtaggctgttc 247  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  5050486 aactatgattggaagggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtaggttgttc 5050553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 1466926 - 1466874
Alignment:
Q  191 gaagggggctgcgcgaacgcaggcccccacagcaacaaattatgatgtaggct 243  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1466926 gaagggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtaggct 1466874  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 336 - 390
Target Start/End: Original strand, 32774127 - 32774181
Alignment:
Q  336 ttcatcttctatttaggcactctctacggttccaagtccactcataaaagaggaa 390  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  32774127 ttcatcttctatttaggcactctctaggattccaagtccactcataaaagaggaa 32774181  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 35923385 - 35923337
Alignment:
Q  195 ggggctgcgcgaacgcaggcccccacagcaacaaattatgatgtaggct 243  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  35923385 ggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtaggct 35923337  T

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Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 310 - 390
Target Start/End: Original strand, 53553626 - 53553704
Alignment:
Q  310 tagcagatccaaaaaagccagcacctttcatcttctatttaggcactctctacggttccaagtccactcataaaagaggaa 390  Q
    ||||||||||||||||  |||| |||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||    
T  53553626 tagcagatccaaaaaa--cagcgcctttcatctcctatttaggcactctctaggattccaagtccactcataaaagaggaa 53553704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 193 - 243
Target Start/End: Complemental strand, 9450851 - 9450801
Alignment:
Q  193 agggggctgcgcgaacgcaggcccccacagcaacaaattatgatgtaggct 243  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9450851 agggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtaggct 9450801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 193 - 243
Target Start/End: Complemental strand, 17724700 - 17724650
Alignment:
Q  193 agggggctgcgcgaacgcaggcccccacagcaacaaattatgatgtaggct 243  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17724700 agggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtaggct 17724650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 193 - 243
Target Start/End: Complemental strand, 19025929 - 19025879
Alignment:
Q  193 agggggctgcgcgaacgcaggcccccacagcaacaaattatgatgtaggct 243  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  19025929 agggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtaggct 19025879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 28838381 - 28838431
Alignment:
Q  193 agggggctgcgcgaacgcaggcccccacagcaacaaattatgatgtaggct 243  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28838381 agggggccgcgcgaacgcaggcccccacagcaacaaattatgatgtaggct 28838431  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 243
Target Start/End: Original strand, 28830401 - 28830466
Alignment:
Q  177 ttaaactattattggaagggggctgcgcgaacgcaggcccccacagcaacaaattatgatgtaggct 243  Q
    ||||||||  ||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||    
T  28830401 ttaaactaaaattggaaggggcc-gcgcgaacgcaggcccccacaacaacaaattatgatgtaggct 28830466  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 195 - 241
Target Start/End: Complemental strand, 26640865 - 26640819
Alignment:
Q  195 ggggctgcgcgaacgcaggcccccacagcaacaaattatgatgtagg 241  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||    
T  26640865 ggggccgcgcgaacgcaggcccccactgcaacaaattatgatgtagg 26640819  T

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Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 254 - 361
Target Start/End: Complemental strand, 50436817 - 50436713
Alignment:
Q  254 acaataaaaaccaccggcactagaaaacagataaaatcgagccactcaagcctctctagcagatccaaaaaagccagcacctttcatcttctatttaggc 353  Q
    ||||| ||||||||| |||||||||| ||||||||| ||||||||| ||||||||  ||||||| |||||| |||||   |||||||| |||||||||||    
T  50436817 acaatgaaaaccacctgcactagaaatcagataaaaccgagccactgaagcctctgcagcagattcaaaaa-gccagt--ctttcatcgtctatttaggc 50436721  T
Q  354 actctcta 361  Q
    ||||||||    
T  50436720 actctcta 50436713  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 310 - 391
Target Start/End: Complemental strand, 2282354 - 2282273
Alignment:
Q  310 tagcagatccaaaaaagccagcacctttcatcttctatttaggcactctctacggttccaagtccactcataaaagaggaac 391  Q
    ||||| ||||||||||| | ||| ||||||||||||||||||||| || ||| ||||| ||||||| ||||| |||||||||    
T  2282354 tagcatatccaaaaaagacggcatctttcatcttctatttaggcattccctagggttctaagtccattcatagaagaggaac 2282273  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 44089832 - 44089780
Alignment:
Q  195 ggggctgcgcgaacgcaggcccccacagcaacaaattatgatgtaggctgttc 247  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||| ||||||    
T  44089832 ggggccgcgcgaacgcaggccccctcagcaacaaattatgatgtagactgttc 44089780  T

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Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 321 - 391
Target Start/End: Complemental strand, 1034400 - 1034329
Alignment:
Q  321 aaaaagccagcacctttcatcttc-tatttaggcactctctacggttccaagtccactcataaaagaggaac 391  Q
    |||||| ||||||||||||||| | |||||||||||||| || | |||||||||||||||||||||||||||    
T  1034400 aaaaagacagcacctttcatctccctatttaggcactctttaggattccaagtccactcataaaagaggaac 1034329  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 387
Target Start/End: Complemental strand, 32549020 - 32548944
Alignment:
Q  310 tagcagatccaaaaaagccagcacctttcatcttctatttaggcactctctacggttccaagtccactcataaaagag 387  Q
    |||||||| ||||||| | |||||| |||||||||||||||| || | |||| | ||| ||||||||| |||||||||    
T  32549020 tagcagattcaaaaaaac-agcacccttcatcttctatttagacattatctaggattctaagtccacttataaaagag 32548944  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 310 - 391
Target Start/End: Original strand, 1479422 - 1479500
Alignment:
Q  310 tagcagatccaaaaaagccagcacctttcatcttctatttaggcactctctacggttccaagtccactcataaaagaggaac 391  Q
    |||||||||||||||| | ||||| ||||||||| ||||||||||||||  | | |||||||||||||||||||||||||||    
T  1479422 tagcagatccaaaaaaac-agcacatttcatcttttatttaggcactct--aggattccaagtccactcataaaagaggaac 1479500  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 243
Target Start/End: Original strand, 7959598 - 7959663
Alignment:
Q  177 ttaaactattattggaagggggctgcgcgaacgcaggcccccacagcaacaaattatgatgtaggct 243  Q
    ||||||||| | ||||||||| | |||||||||||| ||||||||||||||||||||||||||||||    
T  7959598 ttaaactatgactggaaggggcc-gcgcgaacgcagacccccacagcaacaaattatgatgtaggct 7959663  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 311 - 387
Target Start/End: Original strand, 13016028 - 13016101
Alignment:
Q  311 agcagatccaaaaaagccagcacctttcatcttctatttaggcactctctacggttccaagtccactcataaaagag 387  Q
    ||||||||||||||   ||||||| ||||||||||||| |||||||||||  | |||||||||||||||||||||||    
T  13016028 agcagatccaaaaa---cagcaccattcatcttctattaaggcactctctcggattccaagtccactcataaaagag 13016101  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 336 - 390
Target Start/End: Complemental strand, 11272615 - 11272561
Alignment:
Q  336 ttcatcttctatttaggcactctctacggttccaagtccactcataaaagaggaa 390  Q
    |||||||||||||| ||||||||||| |  ||||||| |||||||| ||||||||    
T  11272615 ttcatcttctatttgggcactctctaggaatccaagttcactcatagaagaggaa 11272561  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 336 - 390
Target Start/End: Original strand, 33858654 - 33858708
Alignment:
Q  336 ttcatcttctatttaggcactctctacggttccaagtccactcataaaagaggaa 390  Q
    |||||||||||||||| || |||| | | ||||||||||||||||| ||||||||    
T  33858654 ttcatcttctatttagacattctcgaggattccaagtccactcatataagaggaa 33858708  T

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Target: scaffold0760 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 310 - 390
Target Start/End: Original strand, 1696 - 1776
Alignment:
Q  310 tagcagatccaaaaaagccagcacctttcatcttctatttaggcactctctacggttccaagtccactcataaaagaggaa 390  Q
    ||||||||||||||||| |||     ||||||||||||| || || |||||| | ||||||||||||||||||||||||||    
T  1696 tagcagatccaaaaaagacagtcggcttcatcttctattaagacattctctaggattccaagtccactcataaaagaggaa 1776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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