View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1406_low_20 (Length: 356)
Name: NF1406_low_20
Description: NF1406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1406_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 115 - 341
Target Start/End: Complemental strand, 27778536 - 27778310
Alignment:
| Q |
115 |
tcttgagcaattctataactttgattcaactcagcacacatatttgatgaactaagacaactctttattccatcccatttatgtgaacttctaacccttc |
214 |
Q |
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| T |
27778536 |
tcttgagcaattctataactttgattcaactcagcacacatatttgatgaactaagacaactctttattccatcccatttatgtgaacttctaacccttc |
27778437 |
T |
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| Q |
215 |
tacgaagccaaaatgaaaaatcatccacacgatattctaaatatgacctattaggttcaatattcccatgacctctaagtgtaaccgaatacacaaaaat |
314 |
Q |
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| T |
27778436 |
tacgaagccaaaatgaaaaatcatccactcgatattctaaatatgacctattaggttcaatattcccatgacctctaagtgtaactgaatacacaaaaat |
27778337 |
T |
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| Q |
315 |
caccaaagaacccaacaatacaatgag |
341 |
Q |
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| T |
27778336 |
caccaaagaacccaacaatacaatgag |
27778310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 321
Target Start/End: Complemental strand, 12639591 - 12639499
Alignment:
| Q |
229 |
gaaaaatcatccacacgatattctaaatatgacctattaggttcaatattcccatgacctctaagtgtaaccgaatacacaaaaatcaccaaa |
321 |
Q |
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| T |
12639591 |
gaaaaatcatccaaacggtattccaaataagccctattaggttcaatcataccatgaccacgaagagtaaccatgtaaacaaaaataaccaaa |
12639499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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