View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1406_low_29 (Length: 315)

Name: NF1406_low_29
Description: NF1406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1406_low_29
NF1406_low_29
[»] chr8 (4 HSPs)
chr8 (165-286)||(37193285-37193406)
chr8 (165-257)||(37182182-37182274)
chr8 (79-111)||(3193523-3193555)
chr8 (171-247)||(29461186-29461262)
[»] chr3 (2 HSPs)
chr3 (165-285)||(21105380-21105500)
chr3 (165-231)||(42036775-42036841)
[»] scaffold0495 (1 HSPs)
scaffold0495 (167-285)||(10718-10836)
[»] chr6 (1 HSPs)
chr6 (167-285)||(10233990-10234108)
[»] chr2 (1 HSPs)
chr2 (77-111)||(17854474-17854508)


Alignment Details
Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 165 - 286
Target Start/End: Complemental strand, 37193406 - 37193285
Alignment:
Q  165 gtttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagctttttgcctactgtgccttt 264  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||| |  |||||||||||||| ||||||  |||    
T  37193406 gtttgtttgtgcggtgagtgatcgctactgcacgttcaaagccaatctcaccgcggttttgagaagctagttggtgtagctttttgcccactgtgatttt 37193307  T
Q  265 tcaccatggttttgtgagtttc 286  Q
    ||||| ||||||  ||||||||    
T  37193306 tcaccgtggtttcatgagtttc 37193285  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 165 - 257
Target Start/End: Complemental strand, 37182274 - 37182182
Alignment:
Q  165 gtttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagctttttgcctactg 257  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||| |  |||||||||||||| ||||    
T  37182274 gtttgtttgtgcggtgagtgatcgctactgcacgttcaaagccaatctcaccgcggttttgagaagctagttggtgtagctttttgcccactg 37182182  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 111
Target Start/End: Complemental strand, 3193555 - 3193523
Alignment:
Q  79 ttaaataatttagagcaactagtttaatctatt 111  Q
    |||||||| ||||||||||||||||||||||||    
T  3193555 ttaaataaattagagcaactagtttaatctatt 3193523  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 247
Target Start/End: Original strand, 29461186 - 29461262
Alignment:
Q  171 ttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagcttt 247  Q
    |||||||||||||||||||||  ||||||| | || | |||| ||| |||| |||||||||||| |  |||||||||    
T  29461186 ttgtgcggtgagtgaccgctaccgcacgtttagagtctatcttaccatggtattgagaagctagttggtgtagcttt 29461262  T

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Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 165 - 285
Target Start/End: Complemental strand, 21105500 - 21105380
Alignment:
Q  165 gtttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagctttttgcctactgtgccttt 264  Q
    |||||||||||| |||||||||||||| |||| ||| |||| ||||||||||||||| || ||||||||| |  |||||||||  ||| || ||||||||    
T  21105500 gtttgtttgtgccgtgagtgaccgctactgcatgtttaaagtcaatctcaccgtggtatttagaagctagttggtgtagctttacgccaaccgtgccttt 21105401  T
Q  265 tcaccatggttttgtgagttt 285  Q
    ||||||||||||||| |||||    
T  21105400 tcaccatggttttgttagttt 21105380  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 165 - 231
Target Start/End: Complemental strand, 42036841 - 42036775
Alignment:
Q  165 gtttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagc 231  Q
    |||| |||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||    
T  42036841 gtttatttgtgcggtgagtgaccgctaatgcacattcaaagtcaatatcaccgtggttttgagaagc 42036775  T

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Target: scaffold0495 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 167 - 285
Target Start/End: Original strand, 10718 - 10836
Alignment:
Q  167 ttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagctttttgcctactgtgccttttc 266  Q
    |||||||| ||||||||||||||||   |||||||||||||||||| | ||||||||||||||||||| |  || |||||||||| ||   ||  |||||    
T  10718 ttgtttgtacggtgagtgaccgctaccacacgttcaaagccaatctaaacgtggttttgagaagctagttgttgcagctttttgcataacatgtattttc 10817  T
Q  267 accatggttttgtgagttt 285  Q
    |||||||||||||||||||    
T  10818 accatggttttgtgagttt 10836  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 167 - 285
Target Start/End: Original strand, 10233990 - 10234108
Alignment:
Q  167 ttgtttgtgcggtgagtgaccgctaatgcacgttcaaagccaatctcaccgtggttttgagaagctagcttatgtagctttttgcctactgtgccttttc 266  Q
    |||||||| ||||||||||||||||   |||||||||||||||||| | ||||||||||||||||||| |  || |||||||||| ||   ||  |||||    
T  10233990 ttgtttgtacggtgagtgaccgctaccacacgttcaaagccaatctaaacgtggttttgagaagctagttgttgcagctttttgcataacatgtattttc 10234089  T
Q  267 accatggttttgtgagttt 285  Q
    |||||||||||||||||||    
T  10234090 accatggttttgtgagttt 10234108  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 111
Target Start/End: Complemental strand, 17854508 - 17854474
Alignment:
Q  77 aattaaataatttagagcaactagtttaatctatt 111  Q
    |||||||||| ||||||||||||||||||||||||    
T  17854508 aattaaataaattagagcaactagtttaatctatt 17854474  T

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