View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1406_low_33 (Length: 270)
Name: NF1406_low_33
Description: NF1406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1406_low_33 |
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Alignment Details
Target: chr6 (Bit Score: 92; Significance: 9e-45; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 42 - 154
Target Start/End: Original strand, 21242315 - 21242431
Alignment:
| Q |
42 |
caacaaaatgaatcctttgaaccttgctttctatataaatgcctgcactaagtgaataagaataaatggtcacttgtctaaatcc----tttaagagact |
137 |
Q |
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| T |
21242315 |
caacaaaatgaatcctttgaaacttgctttctatataaatgcctgcactaagtgaataagaataaatggtcacttgtctaactcctttgtttaagagact |
21242414 |
T |
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| Q |
138 |
acaatccattgattatg |
154 |
Q |
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| T |
21242415 |
acaatccattgattatg |
21242431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 21286153 - 21286089
Alignment:
| Q |
175 |
ggagagctcataccagctctctgaatatcaggctgaagtacaagtgttagtgtttgttctagaat |
239 |
Q |
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| T |
21286153 |
ggagagctcataccagctctctgaatatcaggctgaagtacaagtgtaagtgtttgttctagaat |
21286089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 21242786 - 21242828
Alignment:
| Q |
175 |
ggagagctcataccagctctctgaatatcaggctgaagtacaa |
217 |
Q |
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| T |
21242786 |
ggagagctcataccagctctctgaatatcaggctgaagtacaa |
21242828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 21156693 - 21156616
Alignment:
| Q |
52 |
aatcctttgaaccttgctttctatataaatgcctgcactaagtgaataagaataaatggtcacttgtctaaatccttt |
129 |
Q |
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| T |
21156693 |
aatcctttgaacgttgctttctctataaatgcatgcattatgcgaataagaataaacagccatttgtctaaatccttt |
21156616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 4060877 - 4060944
Alignment:
| Q |
175 |
ggagagctcataccagctctctgaatatcaggctgaagtacaagtgttagtgtttgttctagaataat |
242 |
Q |
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| T |
4060877 |
ggagagctcaaaccagctctctgaatatcgggctgaagtacaactgtaagtgtttgttctagaataat |
4060944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 241
Target Start/End: Original strand, 4066056 - 4066116
Alignment:
| Q |
181 |
ctcataccagctctctgaatatcaggctgaagtacaagtgttagtgtttgttctagaataa |
241 |
Q |
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| T |
4066056 |
ctcataccggctctctgaacattaggctgaagtacaactgtaagtgtttgttctagaataa |
4066116 |
T |
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