View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1406_low_36 (Length: 228)
Name: NF1406_low_36
Description: NF1406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1406_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 14206057 - 14206151
Alignment:
| Q |
1 |
cgattgaatattttatactggttattttgttttaagcagtaaattacattaaactcatgtgcttcgattagttggttaaacagattaaacttcta |
95 |
Q |
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| T |
14206057 |
cgattgaatattttatactggttattttgttttaagcagtaaattacattaaactcatgtgcttcgattagttggttaaacagattaaacttcta |
14206151 |
T |
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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 47865468 - 47865407
Alignment:
| Q |
161 |
tggagtttgagtgataatgaagggttagtgaagaagatcattagtgatggtgaagaacctgg |
222 |
Q |
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| T |
47865468 |
tggagtttgagtgataatgaagggttagtgaagaagatcattagtgctggtgaagaacctgg |
47865407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 47865557 - 47865493
Alignment:
| Q |
99 |
gagggatgactttgttcaaccagaagaaactgagggttatgctttgtataagactatgattttgg |
163 |
Q |
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| T |
47865557 |
gagggatgactttgttcaaccagaagaagctgagggttatgctttgtacaagactatgattttgg |
47865493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 31406273 - 31406367
Alignment:
| Q |
1 |
cgattgaatattttatactggttattttgttttaagcagtaaattacattaaactcatgtgcttcgattagttggttaaacagattaaacttcta |
95 |
Q |
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| T |
31406273 |
cgattgaatattttatactggttattttgttttaagcagtaaattacattaaactcatgtgcttcgattagttggttaaaaagattaaacttcta |
31406367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 19469761 - 19469825
Alignment:
| Q |
99 |
gagggatgactttgttcaaccagaagaaactgagggttatgctttgtataagactatgattttgg |
163 |
Q |
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| T |
19469761 |
gagggatgactttgttcaaccagaagaagctgagggttatgctttgtataagactatgattttgg |
19469825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 19469850 - 19469911
Alignment:
| Q |
161 |
tggagtttgagtgataatgaagggttagtgaagaagatcattagtgatggtgaagaacctgg |
222 |
Q |
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| T |
19469850 |
tggaatttcagtgataatgaagggttagtgaagaagatcattagtgctgctgaagaacctgg |
19469911 |
T |
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