View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1406_low_5 (Length: 578)
Name: NF1406_low_5
Description: NF1406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1406_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 25 - 299
Target Start/End: Original strand, 24914446 - 24914717
Alignment:
| Q |
25 |
catcattgtccatccttaactcttcttgcgcagcagaatctgatgacttgtttgcatgataaacaactctttctgggagaatgttgagaatgtttgcttg |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24914446 |
catcattgtccatccttaactcttcttgcgcagcagaatctgatgacttgtttgcatgataaacaactctttctgggagaatgttgagaat---tgcttg |
24914542 |
T |
|
| Q |
125 |
cgcagaagtgtctgacgacttgtttgtatgatcaacaactctttctgggagaatgtttacttgcgtagcagagttagacgacttgattgcaagatcaaca |
224 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
24914543 |
cgcagaagtgtctgacgactggtttgtatgatcaacaactctttctgggagaatgtttacttgcgcagcagagttagacgacttgattgcaagatcaaca |
24914642 |
T |
|
| Q |
225 |
attttttcctgnnnnnnnttccaaaacatctaagcccactactgaataagtatataaatataaacaaagaacatt |
299 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
24914643 |
attttttcctgaaaaaaaatccaaaacatctaagcccactactgaacaagtatataaatataaacaaaaaacatt |
24914717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 447 - 549
Target Start/End: Original strand, 24914712 - 24914812
Alignment:
| Q |
447 |
aacattcgataaatacactatatgtgatataatatttgcatattcaagcataagtcacaattttgtttcagacttattatcagtatatagagtaagtatt |
546 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
24914712 |
aacattcgataaatacactat--gtgatataatatttgcatattcaagcataagtcacaattttgtttcagacttattatcagtatatagagtaagtaat |
24914809 |
T |
|
| Q |
547 |
atc |
549 |
Q |
| |
|
||| |
|
|
| T |
24914810 |
atc |
24914812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University