View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1406_low_8 (Length: 491)
Name: NF1406_low_8
Description: NF1406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1406_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 115 - 473
Target Start/End: Complemental strand, 27778536 - 27778178
Alignment:
| Q |
115 |
tcttgagcaattctataactttgattcaactcagcacacatatttgatgaactaagacaactctttattccatcccatttatgtgaacttctaacccttc |
214 |
Q |
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| T |
27778536 |
tcttgagcaattctataactttgattcaactcagcacacatatttgatgaactaagacaactctttattccatcccatttatgtgaacttctaacccttc |
27778437 |
T |
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| Q |
215 |
tacgaagccaaaatgaaaaatcatccacacgatattctaaatatgacctattaggttcaatattcccatgacctctaagtgtaaccgaatacacaaaaat |
314 |
Q |
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| T |
27778436 |
tacgaagccaaaatgaaaaatcatccactcgatattctaaatatgacctattaggttcaatattcccatgacctctaagtgtaactgaatacacaaaaat |
27778337 |
T |
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| Q |
315 |
caccaaagaacccaacaatacaatgagcataatcatagcaatgaggtagaatatgagaagcattgggattctccaaaaggctccaatgaaaccaaccata |
414 |
Q |
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| T |
27778336 |
caccaaagaacccaacaatacaatgagcacaatcatagcaataaggtagaatatgagaagcattgggattctccaaaaggctccaatgaaaccaaccata |
27778237 |
T |
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| Q |
415 |
ccaacaattaaaattagtatccctaaaatgatcactggccattgtaagattttgacaca |
473 |
Q |
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| T |
27778236 |
ccaacaattaaaattagtatccctaaaatgatcactggccattgtaggattttgacaca |
27778178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 229 - 408
Target Start/End: Complemental strand, 12639591 - 12639412
Alignment:
| Q |
229 |
gaaaaatcatccacacgatattctaaatatgacctattaggttcaatattcccatgacctctaagtgtaaccgaatacacaaaaatcaccaaagaaccca |
328 |
Q |
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| T |
12639591 |
gaaaaatcatccaaacggtattccaaataagccctattaggttcaatcataccatgaccacgaagagtaaccatgtaaacaaaaataaccaaacaaacta |
12639492 |
T |
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| Q |
329 |
acaatacaatgagcataatcatagcaatgaggtagaatatgagaagcattgggattctccaaaaggctccaatgaaacca |
408 |
Q |
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| T |
12639491 |
gcaagataataagcacaagcatagcaactaggtagaatattaggagacatgagattctccaaaaggaaccaatgagacca |
12639412 |
T |
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