View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1406_low_9 (Length: 451)

Name: NF1406_low_9
Description: NF1406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1406_low_9
NF1406_low_9
[»] chr8 (10 HSPs)
chr8 (29-300)||(6262383-6262654)
chr8 (87-222)||(6449888-6450023)
chr8 (89-162)||(6456357-6456430)
chr8 (110-186)||(6390101-6390177)
chr8 (110-228)||(6331014-6331132)
chr8 (110-171)||(6320552-6320613)
chr8 (395-431)||(6262676-6262712)
chr8 (110-196)||(6273673-6273759)
chr8 (110-228)||(6351462-6351580)
chr8 (110-198)||(6369119-6369207)
[»] chr5 (1 HSPs)
chr5 (101-223)||(9605992-9606114)
[»] chr2 (2 HSPs)
chr2 (95-210)||(42689358-42689473)
chr2 (31-170)||(42692311-42692450)
[»] chr1 (1 HSPs)
chr1 (87-168)||(36926126-36926207)
[»] chr3 (1 HSPs)
chr3 (101-162)||(36745682-36745743)


Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 29 - 300
Target Start/End: Original strand, 6262383 - 6262654
Alignment:
Q  29 acttctttccaccaagattgcagttcagagtcctgctgaattttttcatctgatgtgaagtatatggagacgtagtcttgtacccatgtcttaatagcat 128  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6262383 acttctttccaccaagattggagttcagagtcctgctgaattttttcatctgatgtgaagtatatggagacgtagtcttgtacccatgtcttaatagcat 6262482  T
Q  129 cccaaatgtcaagtccatcaacagcataagggtaatcctctatgagtagacgaagaccgtgaggggaagatgaatccgcaactgctattcctctaaataa 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6262483 cccaaatgtcaagtccatcaacagcataagggtaatcctctatgagtagacgaagaccgtgaggggaagatgaatccgcaactgctattcccctaaataa 6262582  T
Q  229 acaagagcacaataattatacgggttaaatatattgttagtccttataaaatcatgatcattcaactttaat 300  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6262583 acaagatcacaataattatactggttaaatatattgttagtccttataaaatcatgatcgttcaactttaat 6262654  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 87 - 222
Target Start/End: Original strand, 6449888 - 6450023
Alignment:
Q  87 agtatatggagacgtagtcttgtacccatgtcttaatagcatcccaaatgtcaagtccatcaacagcataagggtaatcctctatgagtagacgaagacc 186  Q
    |||||| |||||| |||||||| ||||||| ||||||||||||||| || || ||||||||||||||||||||||| |||||||| |  || ||||| ||    
T  6449888 agtataaggagacatagtcttggacccatgccttaatagcatcccatatttctagtccatcaacagcataagggtagtcctctatcacaagtcgaaggcc 6449987  T
Q  187 gtgaggggaagatgaatccgcaactgctattcctct 222  Q
    |||||||||||| | |||| |||| |||| ||||||    
T  6449988 gtgaggggaagagggatcctcaacagctaatcctct 6450023  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 6456357 - 6456430
Alignment:
Q  89 tatatggagacgtagtcttgtacccatgtcttaatagcatcccaaatgtcaagtccatcaacagcataagggta 162  Q
    |||| |||||| |||||||| ||||||| ||||||||||||||| || || |||||||||||||||||||||||    
T  6456357 tataaggagacatagtcttgaacccatgccttaatagcatcccatatttctagtccatcaacagcataagggta 6456430  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 186
Target Start/End: Original strand, 6390101 - 6390177
Alignment:
Q  110 acccatgtcttaatagcatcccaaatgtcaagtccatcaacagcataagggtaatcctctatgagtagacgaagacc 186  Q
    ||||||| |||||||||| |||| || || ||||||||||||||||| || ||||||||||| || ||||| |||||    
T  6390101 acccatgacttaatagcagcccatatctctagtccatcaacagcatatggataatcctctatcagaagacgcagacc 6390177  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 228
Target Start/End: Original strand, 6331014 - 6331132
Alignment:
Q  110 acccatgtcttaatagcatcccaaatgtcaagtccatcaacagcataagggtaatcctctatgagtagacgaagaccgtgaggggaagatgaatccgcaa 209  Q
    ||||||| ||| ||||||||||| || || ||||||||| ||||||||||||| |||||||| || || ||||  || || ||||||| || |||| |||    
T  6331014 acccatgacttgatagcatcccatatctctagtccatcagcagcataagggtagtcctctatcagaaggcgaattccatgtggggaagttggatcctcaa 6331113  T
Q  210 ctgctattcctctaaataa 228  Q
    | || | ||||||| ||||    
T  6331114 cagccactcctctagataa 6331132  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 171
Target Start/End: Original strand, 6320552 - 6320613
Alignment:
Q  110 acccatgtcttaatagcatcccaaatgtcaagtccatcaacagcataagggtaatcctctat 171  Q
    ||||||| ||| ||||||||||| || || ||||||||| ||||||||||||| ||||||||    
T  6320552 acccatgacttgatagcatcccatatctctagtccatcagcagcataagggtagtcctctat 6320613  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 431
Target Start/End: Original strand, 6262676 - 6262712
Alignment:
Q  395 attggtgtatatttgtaagaattacctttttataaga 431  Q
    |||||||||||||||||||||||||||||| ||||||    
T  6262676 attggtgtatatttgtaagaattaccttttgataaga 6262712  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 6273673 - 6273759
Alignment:
Q  110 acccatgtcttaatagcatcccaaatgtcaagtccatcaacagcataagggtaatcctctatgagtagacgaagaccgtgaggggaa 196  Q
    ||||||| ||||||| || |||| || || | ||||||| ||||||||||||| |||||||| || || ||||| ||||| ||||||    
T  6273673 acccatgacttaataacagcccatatctctaatccatcagcagcataagggtagtcctctatcagaaggcgaaggccgtgtggggaa 6273759  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 228
Target Start/End: Original strand, 6351462 - 6351580
Alignment:
Q  110 acccatgtcttaatagcatcccaaatgtcaagtccatcaacagcataagggtaatcctctatgagtagacgaagaccgtgaggggaagatgaatccgcaa 209  Q
    ||||||| |||||| ||| |||| || || |||||||||  ||||||||| ||||||||||| || || || ||||||  ||| || | || |||| |||    
T  6351462 acccatgacttaatggcagcccatatttctagtccatcagaagcataaggataatcctctatcagaaggcggagaccggtaggagaggctggatcctcaa 6351561  T
Q  210 ctgctattcctctaaataa 228  Q
    | |||| ||||||||||||    
T  6351562 cagctactcctctaaataa 6351580  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 198
Target Start/End: Original strand, 6369119 - 6369207
Alignment:
Q  110 acccatgtcttaatagcatcccaaatgtcaagtccatcaacagcataagggtaatcctctatgagtagacgaagaccgtgaggggaaga 198  Q
    ||||||| |||||||||| |||| || || ||||||||   |||||| || ||||||||||| || ||||| ||||| || ||||||||    
T  6369119 acccatgacttaatagcagcccatatctctagtccatctgaagcatatggataatcctctatcagaagacgcagaccatgtggggaaga 6369207  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 101 - 223
Target Start/End: Complemental strand, 9606114 - 9605992
Alignment:
Q  101 tagtcttgtacccatgtcttaatagcatcccaaatgtcaagtccatcaacagcataagggtaatcctctatgagtagacgaagaccgtgaggggaagatg 200  Q
    |||||||| ||||||| ||||||||||||||| || || ||||||||||| ||||||||||| ||||| || |  |||||||| || || || || ||||    
T  9606114 tagtcttggacccatgacttaatagcatcccatatctcgagtccatcaactgcataagggtagtcctcgatcacaagacgaaggccatgtggagacgatg 9606015  T
Q  201 aatccgcaactgctattcctcta 223  Q
     |||| |||| |||| |||||||    
T  9606014 gatcctcaacggctaatcctcta 9605992  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 95 - 210
Target Start/End: Complemental strand, 42689473 - 42689358
Alignment:
Q  95 gagacgtagtcttgtacccatgtcttaatagcatcccaaatgtcaagtccatcaacagcataagggtaatcctctatgagtagacgaagaccgtgagggg 194  Q
    ||||| || |||||||||||||| |||||||    ||| || || | ||||||||||||||||||||| |||||||| || |||||||| ||||  ||||    
T  42689473 gagacataatcttgtacccatgttttaatagttgtccatatctctaatccatcaacagcataagggtagtcctctatcagaagacgaagtccgtatgggg 42689374  T
Q  195 aagatgaatccgcaac 210  Q
    | |||| |||| ||||    
T  42689373 acgatggatcctcaac 42689358  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 170
Target Start/End: Original strand, 42692311 - 42692450
Alignment:
Q  31 ttctttccaccaagattgcagttcagagtcctgctgaattttttcatctgatgtgaagtatatggagacgtagtcttgtacccatgtcttaatagcatcc 130  Q
    |||||||||||||| ||| |||||||| || ||   || | | |||||||  ||| |||| | |||||| |||||||| ||||||||||| || ||| ||    
T  42692311 ttctttccaccaagcttggagttcagaatcttgtctaagtatgtcatctgtggtgtagtacaaggagacatagtcttgaacccatgtctttattgcagcc 42692410  T
Q  131 caaatgtcaagtccatcaacagcataagggtaatcctcta 170  Q
    || || || | |||||||  ||||||||||||||||||||    
T  42692411 catatctctaatccatcatgagcataagggtaatcctcta 42692450  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 168
Target Start/End: Complemental strand, 36926207 - 36926126
Alignment:
Q  87 agtatatggagacgtagtcttgtacccatgtcttaatagcatcccaaatgtcaagtccatcaacagcataagggtaatcctc 168  Q
    |||| ||||||  ||||||||  ||||||||||| || |||  |||||| || ||||||||||| |||||||||||||||||    
T  36926207 agtaaatggagcagtagtctttaacccatgtcttgatggcaaaccaaatctccagtccatcaactgcataagggtaatcctc 36926126  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 36745743 - 36745682
Alignment:
Q  101 tagtcttgtacccatgtcttaatagcatcccaaatgtcaagtccatcaacagcataagggta 162  Q
    |||||||  ||||||| ||||||||||||||| || || | ||||||||||||| |||||||    
T  36745743 tagtctttcacccatgccttaatagcatcccatatctctaatccatcaacagcaaaagggta 36745682  T

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