View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14070_low_1 (Length: 705)
Name: NF14070_low_1
Description: NF14070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14070_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 590; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 9 - 688
Target Start/End: Complemental strand, 42453664 - 42452985
Alignment:
| Q |
9 |
gattattctcaagatgtaaaagtgattcttatattannnnnnnaaaatgtttccttcaaaacaaccttagtaaaatatttgttttctaaactggtgtata |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42453664 |
gattattctcaagatgtaaaagtgattcttatattatttttttaaaatgtttccttcaaaacaactttagtaaaatatttgttttctaaactggtgtata |
42453565 |
T |
|
| Q |
109 |
tagtatatacaata--atagaacatagcactgtgagctccatattatgtttcatcgttgtccaaagggttgaatacttctatattattcatgaataatca |
206 |
Q |
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||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42453564 |
tagtatatataatatcatagaacatagcactgtgagctccatattatgtttcatcgttgtccaaagggttgaatacttctatattattcatgaataatca |
42453465 |
T |
|
| Q |
207 |
gtggagtcatttttcacatgagtgatgctatttgtcccgatagaattgatcgtgaatagttcccgaaattaaatcagccaattgaatttgtttatgtccg |
306 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42453464 |
gtggagtgatttttcacatgagtgatgctatttgtcccaatagaa--gatcgtgaatagttcccgaaattaaatcagccaattgaatttgtttatgtccg |
42453367 |
T |
|
| Q |
307 |
ggataaatgggaggtaatggggcagnnnnnnnggatgatacatggagtagctatcgtgaagttttcgctgaatttctttcgctaaaagtagcaatttcct |
406 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42453366 |
ggataaatgggaggtaatggggcagtttttttggatgatacatggagtagctatcgtgaagttttcgctgaatttctttcgctaaaagtagcaatttcct |
42453267 |
T |
|
| Q |
407 |
tttcacatatatgtaaaacctatgtaagtatcttttgtaattaataatgttgatatcatgaatattatcactcgcatttataattgtaactacaataaac |
506 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42453266 |
tttcacatatatgtaaaacctatgtaagtatcttttgtaattaataatgttgatatcatgaatattatcactcgcatttataattgtaactacaataaac |
42453167 |
T |
|
| Q |
507 |
ataactgtacaattgtgcaagtagtttataaatcttgatcgcaactagaatattgcataattgtacatactacagtatcatgatcattaggtggtatttt |
606 |
Q |
| |
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|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42453166 |
ataattgtacaactgtgcaagtagtttataaatcttgatcgcaactagaatattgcataattggacatactacagtatcatgatcattaggtggtatttt |
42453067 |
T |
|
| Q |
607 |
cggatgatttaaaggaataaaacctctaaaaaagatttgattgaacttttaaagttttttgttggtcaaagagacttcactt |
688 |
Q |
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| T |
42453066 |
cggatgatttaaaggaataaaacctctaaaaaagatttgattgaacttttaaagttttttgttggtcaaagagacttcactt |
42452985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 182; Significance: 5e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 432 - 688
Target Start/End: Original strand, 24116681 - 24116938
Alignment:
| Q |
432 |
aagtatcttttgtaattaataatgttgatatcatgaatattatcactcgcatttataattgtaactacaataaacataactgtacaattgtgcaagtagt |
531 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||| |
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| T |
24116681 |
aagtaacttttgtaattaatagcgttgatatcatgaatattatcactcgcatttataattgtaactacaataaacataattgtacagttgtggaagtagt |
24116780 |
T |
|
| Q |
532 |
ttataaatcttgatcgcaactagaatattgcataattgtacatactacagtatcatgatcattaggtggtattttcggatgatttaaaggaat-aaaacc |
630 |
Q |
| |
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||||||||||||||||||||||||||||||||||| | |||| | ||| |||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
24116781 |
ttataaatcttgatcgcaactagaatattgcataactttacacattactgtatcatgatcatttggtggtattttcggatgatttaaaggaataaaaacc |
24116880 |
T |
|
| Q |
631 |
tctaaaaaagatttgattgaacttttaaagttttttgttggtcaaagagacttcactt |
688 |
Q |
| |
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|||||||||||||||| | || || |||| |||||||||||||||||||||||||||| |
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| T |
24116881 |
tctaaaaaagatttgacttaaattctaaatttttttgttggtcaaagagacttcactt |
24116938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 9 - 44
Target Start/End: Original strand, 24115567 - 24115602
Alignment:
| Q |
9 |
gattattctcaagatgtaaaagtgattcttatatta |
44 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
24115567 |
gattattctcaagatgtaaaagtgattcttatatta |
24115602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 342 - 408
Target Start/End: Original strand, 27129509 - 27129575
Alignment:
| Q |
342 |
tgatacatggagtagctatcgtgaagttttcgctgaatttctttcgctaaaagtagcaatttccttt |
408 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
27129509 |
tgatacatggagtagatattgtgaagttttcgctcgatttctttcgctaaaagtagcaatttccttt |
27129575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 339 - 387
Target Start/End: Original strand, 27982294 - 27982342
Alignment:
| Q |
339 |
ggatgatacatggagtagctatcgtgaagttttcgctgaatttctttcg |
387 |
Q |
| |
|
|||||||| ||||||||||||| ||||| |||||| || |||||||||| |
|
|
| T |
27982294 |
ggatgataaatggagtagctatggtgaaattttcgttggatttctttcg |
27982342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 356 - 409
Target Start/End: Complemental strand, 10410157 - 10410104
Alignment:
| Q |
356 |
gctatcgtgaagttttcgctgaatttctttcgctaaaagtagcaatttcctttt |
409 |
Q |
| |
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|||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| |
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|
| T |
10410157 |
gctatcgtgaagttttcgttgaatttattttgctaaaagtagcaatttcctttt |
10410104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 341 - 405
Target Start/End: Original strand, 55016346 - 55016410
Alignment:
| Q |
341 |
atgatacatggagtagctatcgtgaagttttcgctgaatttctttcgctaaaagtagcaatttcc |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||| |||||||| |||||||| |
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| T |
55016346 |
atgatacatggagtagctatcgtgaagttttcgctgtaactctttcattaaaagtaccaatttcc |
55016410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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